RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA494251" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA494251 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2382498 2382498 PRJNA494251_P_NODE_6622_length_505_cov_1.777778_g6321_i0 PRJNA494251 6622 505 1.777778 8.9777789 Pseudomonadati 3379134 Bacteria Bacteria 121 1.33e-22   NTclustered gi|2007135636|gb|CP061800.1| 45655 g6321 i0 75.385 17.5465346534653 260 58 51 6 249 505 7420126 7420382 Desulfonema magnum strain 4be13 chromosome, complete genome blastn 8861 121 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfococcaceae Desulfonema Desulfonema magnum
14504156 14504156 PRJNA494251_P_NODE_38072_length_250_cov_0.870056_g37758_i0 PRJNA494251 38072 250 0.870056 2.17514 Desulfuromonas sp. DDH964 1823759 Bacteria Bacteria 91.6 4.8e-14   NTclustered gi|1015516084|gb|CP015080.1| 1823759 g37758 i0 100 20.708 49 0 20 0 202 250 2882299 2882347 Desulfuromonas sp. DDH964 chromosome, complete genome blastn 5177 91.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp. DDH964
23427929 23427929 PRJNA494251_P_NODE_47559_length_242_cov_7.426036_g47245_i0 PRJNA494251 47559 242 7.426036 17.97100712 Desulfosarcina widdelii 947919 Bacteria Bacteria 147 9.72e-31   NTclustered gi|1773416083|dbj|AP021875.1| 947919 g47245 i0 89.167 83.698347107438 120 10 49 3 33 151 6916258 6916375 Desulfosarcina widdelii PP31 DNA, complete genome blastn 20255 147 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosarcinaceae Desulfosarcina Desulfosarcina widdelii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;