RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA494251" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA494251 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1106833 1106833 PRJNA494251_S_NODE_701_length_258_cov_0.724324_g686_i0 PRJNA494251 701 258 0.724324 1.86875592 Philodinidae 44580 Rotifera other_Eukaryota 292 1.27e-74   NTclustered gi|270267490|ref|NC_013568.1| 231624 g686 i0 88.843 6.53100775193798 242 22 93 5 6 245 2403 2165 Rotaria rotatoria mitochondrion, complete genome blastn 1685 292 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria rotatoria
3026332 3026332 PRJNA494251_P_NODE_38343_length_250_cov_0.870056_g38029_i0 PRJNA494251 38343 250 0.870056 2.17514 Philodina citrina 468664 Rotifera other_Eukaryota 207 4.57e-49   NTclustered gi|407227484|emb|FR856884.1| 468664 g38029 i0 81.6 10.864 250 46 100 0 1 250 9986 10235 Philodina citrina complete mitochondrial genome blastn 2716 207 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
5579038 5579038 PRJNA494251_P_NODE_45785_length_244_cov_0.900585_g45471_i0 PRJNA494251 45785 244 0.900585 2.1974274 Proales similis 360698 Rotifera other_Eukaryota 222 1.59e-53   NTclustered gi|1859640894|gb|MN970216.1| 360698 g45471 i0 83.966 14.1680327868852 237 32 95 6 3 235 12509 12275 Proales similis mitochondrion, complete genome blastn 3457 222 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Proalidae Proales Proales similis
11954061 11954061 PRJNA494251_P_NODE_29970_length_272_cov_1.376884_g29656_i0 PRJNA494251 29970 272 1.376884 3.74512448 Philodina citrina 468664 Rotifera other_Eukaryota 320 6.2e-83   NTclustered gi|407227484|emb|FR856884.1| 468664 g29656 i0 88.364 25.7904411764706 275 20 99 8 4 272 2015 1747 Philodina citrina complete mitochondrial genome blastn 7015 320 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
11954084 11954084 PRJNA494251_P_NODE_3150_length_694_cov_22.086957_g2878_i0 PRJNA494251 3150 694 22.086957 153.28348158 Brachionus koreanus 1199090 Rotifera other_Eukaryota 346 2.84e-90   NTclustered gi|477541870|gb|KC603851.1| 1199090 g2878 i0 77.833 40.7694524495677 609 102 85 29 86 678 9615 10206 Brachionus sp. 'koreanus' chromosome I mitochondrion, complete sequence blastn 28294 346 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus koreanus
22784024 22784024 PRJNA494251_P_NODE_48838_length_241_cov_4.553571_g48524_i0 PRJNA494251 48838 241 4.553571 10.97410611 Metazoa 33208 Rotifera other_Eukaryota 414 2.3999999999999993e-111   NTclustered gi|37785582|gb|AY210469.1| 96448 g48524 i0 100 58.1867219917012 224 0 93 0 14 237 1821 1598 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 14023 416 0.995192307692308 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;