RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA494251" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA494251 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24701246 24701246 PRJNA494251_P_NODE_26000_length_286_cov_4.248826_g25686_i0 PRJNA494251 26000 286 4.248826 12.15164236 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 185 2.5e-42   NTclustered gi|294874491|ref|XM_002766937.1| 423536 g25686 i0 81.034 69.3041958041958 232 44 81 0 3 234 375 606 Perkinsus marinus ATCC 50983 40S ribosomal protein S5, putative, mRNA blastn 19821 185 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
24701498 24701498 PRJNA494251_P_NODE_48860_length_241_cov_3.017857_g48546_i0 PRJNA494251 48860 241 3.017857 7.27303537 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 99 2.75e-16   NTclustered gi|294925483|ref|XM_002778887.1| 423536 g48546 i0 84.466 4.06639004149378 103 12 42 3 141 241 444 344 Perkinsus marinus ATCC 50983 ribosomal protein S23, putative, mRNA blastn 980 99 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;