RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA494251" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA494251 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11310029 11310029 PRJNA494251_P_NODE_2929_length_715_cov_4.378505_g2660_i0 PRJNA494251 2929 715 4.378505 31.30631075 Metazoa 33208 Echinodermata other_Eukaryota 195 1.12e-44   NTclustered gi|2707408381|ref|XM_054893204.2| 7653 g2660 i0 80.545 31.6265734265734 257 46 36 4 453 707 597 343 PREDICTED: Lytechinus pictus dynein light chain 2, cytoplasmic-like (LOC129254696), mRNA blastn 22613 195 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
17052696 17052696 PRJNA494251_P_NODE_32734_length_263_cov_1.063158_g32420_i0 PRJNA494251 32734 263 1.063158 2.79610554 Psammechinus miliaris 7660 Echinodermata other_Eukaryota 115 3.02e-21   NTclustered gi|161361|gb|M11085.1|SUPHIS2A2 7660 g32420 i0 86.667 45.8022813688213 105 12 40 2 155 258 350 247 Sea urchin (P.miliaris) late histone H2A-2 late mRNA, complete cds blastn 12046 115 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Parechinidae Psammechinus Psammechinus miliaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;