RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA494251" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA494251 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
475565 475565 PRJNA494251_P_NODE_45681_length_244_cov_0.900585_g45367_i0 PRJNA494251 45681 244 0.900585 2.1974274 Candidatus Promineifilum breve 1806508 Bacteria Bacteria 130 9.88e-26   NTclustered gi|1041165931|emb|LN890655.2| 1806508 g45367 i0 84.848 0.901639344262295 132 16 53 4 89 218 3281281 3281410 Ardenticatena sp. Cfx-K strain Cfx-K genome assembly, chromosome: I blastn 220 130 1 Bacteria   Bacillati Chloroflexota Ardenticatenia Candidatus Promineifilales Candidatus Promineifilaceae Candidatus Promineifilum Candidatus Promineifilum breve
3026285 3026285 PRJNA494251_P_NODE_32963_length_262_cov_1.396825_g32649_i0 PRJNA494251 32963 262 1.396825 3.6596815 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 189 1.7499999999999996e-43   NTclustered gi|2874253725|emb|OY969567.1| 1672391 g32649 i0 81.148 96.9007633587786 244 39 91 6 12 250 2428052 2427811 MAG: uncultured Chloroflexia bacterium isolate MFD01561.bin.c.1 genome assembly, chromosome: 1 blastn 25388 189 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
5578977 5578977 PRJNA494251_P_NODE_39925_length_249_cov_0.875000_g39611_i0 PRJNA494251 39925 249 0.875 2.17875 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 54.7 0.006   NTclustered gi|2893358456|emb|OZ220748.1| 2026734 g39611 i0 100 0.116465863453815 29 0 12 0 188 216 2968558 2968586 MAG: Dehalococcoidia bacterium isolate 6c7b36c8-b3ab-4b4c-a352-7e98d29eb5d7 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
18326711 18326711 PRJNA494251_P_NODE_1015_length_1128_cov_3.496682_g849_i0 PRJNA494251 1015 1128 3.496682 39.44257296 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 56.5 0.009   NTclustered gi|2621703647|emb|OY762633.1| 2026734 g849 i0 100 0.0265957446808511 30 0 3 0 778 807 99590 99561 MAG: Dehalococcoidia bacterium isolate 17254eae-7cb3-4ac9-839e-465292e2b3d4 genome assembly, chromosome: 1 blastn 30 56.5 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
19601373 19601373 PRJNA494251_P_NODE_42236_length_247_cov_0.885057_g41922_i0 PRJNA494251 42236 247 0.885057 2.18609079 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 340 4.25e-89   NTclustered gi|2874254102|emb|OY970185.1| 1672391 g41922 i0 91.566 132.558704453441 249 18 100 3 1 247 1857504 1857751 MAG: uncultured Chloroflexia bacterium isolate MFD06435.bin.c.3 genome assembly, chromosome: 1 blastn 32742 340 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
24701523 24701523 PRJNA494251_P_NODE_51380_length_230_cov_2.815287_g51066_i0 PRJNA494251 51380 230 2.815287 6.4751601 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 73.1 1.58e-8   NTclustered gi|2874253766|emb|OY969711.1| 1672391 g51066 i0 75.46 0.708695652173913 163 33 69 7 1 159 239439 239280 MAG: uncultured Chloroflexia bacterium isolate MFD09730.bin.c.1 genome assembly, chromosome: 1 blastn 163 73.1 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;