RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA494251" and tax_phylum = "Candidatus Altimarinota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA494251 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17052784 17052784 PRJNA494251_P_NODE_4074_length_623_cov_2.487273_g3784_i0 PRJNA494251 4074 623 2.487273 15.49571079 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 348 7.040000000000001e-91   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g3784 i0 79.487 20.0417335473515 507 90 80 13 95 594 1165738 1165239 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 12486 348 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
19601402 19601402 PRJNA494251_P_NODE_44576_length_245_cov_0.895349_g44262_i0 PRJNA494251 44576 245 0.895349 2.19360505 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 281 2.59e-71   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g44262 i0 88.745 4.64081632653061 231 24 94 2 1 231 1252129 1251901 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 1137 281 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
20877199 20877199 PRJNA494251_P_NODE_38157_length_250_cov_0.870056_g37843_i0 PRJNA494251 38157 250 0.870056 2.17514 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 137 6.08e-28   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g37843 i0 81.25 1.412 176 28 69 5 1 172 174077 174251 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 353 137 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;