RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA494251" and tax_clade = "Metamonada"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA494251 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
475400 475400 PRJNA494251_P_NODE_29801_length_272_cov_3.201005_g29487_i0 PRJNA494251 29801 272 3.201005 8.7067336 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 63.9 1.15e-5   NTclustered gi|2319615616|ref|XR_007835995.1| 412133 g29487 i0 88.462 0.6875 52 6 19 0 106 157 2605 2554 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034210), rRNA blastn 187 63.9 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
4302209 4302209 PRJNA494251_P_NODE_29904_length_272_cov_1.547739_g29590_i0 PRJNA494251 29904 272 1.547739 4.20985008 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 58.4 5.36e-4   NTclustered gi|2794958030|ref|XM_067876128.1| 2049356 g29590 i0 92.5 0.915441176470588 40 3 15 0 171 210 1462 1423 Monocercomonoides exilis uncharacterized protein (MONOS_5936), partial mRNA blastn 249 58.4 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
17052555 17052555 PRJNA494251_P_NODE_21754_length_307_cov_1.623932_g21440_i0 PRJNA494251 21754 307 1.623932 4.98547124 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 58.4 6.16e-4   NTclustered gi|2794962199|ref|XM_067873501.1| 2049356 g21440 i0 97.059 0.61237785016286606 34 1 11 0 1 34 2098 2065 Monocercomonoides exilis uncharacterized protein (MONOS_3496), mRNA blastn 188 58.4 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
20877087 20877087 PRJNA494251_P_NODE_29617_length_273_cov_1.540000_g29303_i0 PRJNA494251 29617 273 1.54 4.2042 Trimastix marina 137419 Preaxostyla other_Eukaryota 209 1.41e-49   NTclustered gi|84105342|gb|DQ295218.1| 137419 g29303 i0 81.439 17.4285714285714 264 42 96 5 3 263 1024 765 Trimastix marina beta tubulin gene, partial cds blastn 4758 209 1 Eukaryota Metamonada   Preaxostyla     Trimastigidae Trimastix Trimastix marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;