RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA494251" and tax_clade = "Apusozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA494251 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3026266 3026266 PRJNA494251_P_NODE_31123_length_268_cov_1.430769_g30809_i0 PRJNA494251 31123 268 1.430769 3.83446092 Thecamonas trahens 529818 Root_unresolved Root_unresolved 121 6.63e-23   NTclustered gi|923118461|ref|XM_013897252.1| 461836 g30809 i0 86.364 0.41044776119403 110 15 41 0 146 255 218 327 Thecamonas trahens ATCC 50062 dihydropyrimidine dehydrogenase (NADP+) (AMSG_11403), mRNA blastn 110 121 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
14503820 14503820 PRJNA494251_P_NODE_1092_length_1098_cov_6.100488_g917_i0 PRJNA494251 1092 1098 6.100488 66.98335824 Thecamonas trahens 529818 Root_unresolved Root_unresolved 403 2.6799999999999993e-107   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g917 i0 76.428 15.9617486338798 823 148 73 33 101 900 198 997 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 17526 403 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
17052709 17052709 PRJNA494251_P_NODE_33714_length_260_cov_1.219251_g33400_i0 PRJNA494251 33714 260 1.219251 3.1700526 Thecamonas trahens 529818 Root_unresolved Root_unresolved 65.8 3.04e-6   NTclustered gi|923135816|ref|XM_013905920.1| 461836 g33400 i0 93.182 0.169230769230769 44 3 17 0 185 228 1372 1415 Thecamonas trahens ATCC 50062 uncharacterized protein (AMSG_01870), partial mRNA blastn 44 65.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
23427997 23427997 PRJNA494251_P_NODE_6139_length_522_cov_2.487751_g5839_i0 PRJNA494251 6139 522 2.487751 12.98606022 Thecamonas trahens 529818 Root_unresolved Root_unresolved 224 1.02e-53   NTclustered gi|923125359|ref|XM_013900694.1| 461836 g5839 i0 82.879 11.9272030651341 257 36 48 6 145 397 277 529 Thecamonas trahens ATCC 50062 calmodulin (AMSG_07687), mRNA blastn 6226 224 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;