contig_metadata
21 rows where analysis = "blastn", bioproject = "PRJNA493828" and tax_phylum = "Verrucomicrobiota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1749575 | 1749575 | PRJNA493828_P_NODE_24122_length_273_cov_2.860000_g23703_i0 | PRJNA493828 | 24122 | 273 | 2.86 | 7.8078 | Luteolibacter sp. Populi | 3230487 | Bacteria | Bacteria | 335 | 2.22e-87 | NTclustered | gi|2774618348|gb|CP161812.1| | 3230487 | g23703 | i0 | 91.429 | 230.128205128205 | 245 | 20 | 89 | 1 | 1 | 244 | 1320345 | 1320589 | Luteolibacter sp. Populi chromosome, complete genome | blastn | 62825 | 335 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter sp. Populi | |
| 4301314 | 4301314 | PRJNA493828_P_NODE_11924_length_335_cov_3.645038_g11505_i0 | PRJNA493828 | 11924 | 335 | 3.645038 | 12.2108773 | Akkermansiaceae bacterium | 2562705 | Bacteria | Bacteria | 462 | 1.23e-125 | NTclustered | gi|2022020957|gb|CP059069.1| | 2562705 | g11505 | i0 | 92.835 | 229.522388059701 | 321 | 20 | 95 | 3 | 7 | 325 | 3412359 | 3412678 | Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome | blastn | 76890 | 462 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansiaceae bacterium | ||
| 4301407 | 4301407 | PRJNA493828_P_NODE_17484_length_300_cov_2.281938_g17065_i0 | PRJNA493828 | 17484 | 300 | 2.281938 | 6.845814 | Actomonas aquatica | 2866162 | Bacteria | Bacteria | 340 | 5.319999999999999e-89 | NTclustered | gi|2647674565|gb|CP139781.1| | 2866162 | g17065 | i0 | 92.766 | 239.036666666667 | 235 | 17 | 78 | 0 | 35 | 269 | 4455546 | 4455312 | Actomonas aquatica strain WL0086 chromosome, complete genome | blastn | 71711 | 340 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Actomonas | Actomonas aquatica | |
| 4301500 | 4301500 | PRJNA493828_P_NODE_22984_length_277_cov_1.784314_g22565_i0 | PRJNA493828 | 22984 | 277 | 1.784314 | 4.94254978 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 457 | 4.62e-124 | NTclustered | gi|2874253768|emb|OY969715.1| | 412056 | g22565 | i0 | 98.092 | 200.310469314079 | 262 | 5 | 95 | 0 | 15 | 276 | 913072 | 913333 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD01916.bin.1.1 genome assembly, chromosome: 1 | blastn | 55486 | 457 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 4301522 | 4301522 | PRJNA493828_P_NODE_23984_length_274_cov_1.273632_g23565_i0 | PRJNA493828 | 23984 | 274 | 1.273632 | 3.48975168 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 340 | 4.7999999999999996e-89 | NTclustered | gi|2874253952|emb|OY970277.1| | 412056 | g23565 | i0 | 90.625 | 186.784671532847 | 256 | 24 | 93 | 0 | 16 | 271 | 2748230 | 2748485 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 | blastn | 51179 | 340 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 8127480 | 8127480 | PRJNA493828_P_NODE_10687_length_351_cov_1.438849_g10268_i0 | PRJNA493828 | 10687 | 351 | 1.438849 | 5.05035999 | Lacunisphaera limnophila | 1838286 | Bacteria | Bacteria | 510 | 4.55e-140 | NTclustered | gi|1070531674|gb|CP016094.1| | 1838286 | g10268 | i0 | 92.877 | 99.1282051282051 | 351 | 25 | 100 | 0 | 1 | 351 | 2556751 | 2556401 | Lacunisphaera limnophila strain IG16b, complete genome | blastn | 34794 | 510 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Lacunisphaera | Lacunisphaera limnophila | |
| 8127726 | 8127726 | PRJNA493828_P_NODE_26867_length_265_cov_1.203125_g26448_i0 | PRJNA493828 | 26867 | 265 | 1.203125 | 3.18828125 | Verrucomicrobiia bacterium | 2499141 | Bacteria | Bacteria | 311 | 3.62e-80 | NTclustered | gi|2621704341|emb|OY760937.1| | 2499141 | g26448 | i0 | 88.672 | 13.811320754717 | 256 | 28 | 97 | 1 | 10 | 265 | 3991768 | 3992022 | MAG: Verrucomicrobiae bacterium isolate 066a7682-a1ac-48de-8761-1470dc9e5c3e genome assembly, chromosome: 1 | blastn | 3660 | 311 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiia bacterium | ||||
| 8127744 | 8127744 | PRJNA493828_P_NODE_27787_length_262_cov_1.867725_g27368_i0 | PRJNA493828 | 27787 | 262 | 1.867725 | 4.8934395 | Luteolibacter sp. SL250 | 2995170 | Bacteria | Bacteria | 346 | 9.789999999999999e-91 | NTclustered | gi|2381117106|gb|CP113054.1| | 2995170 | g27368 | i0 | 90.84 | 283.18320610687 | 262 | 19 | 99 | 4 | 2 | 262 | 4718831 | 4718574 | Luteolibacter sp. SL250 chromosome | blastn | 74194 | 346 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter sp. SL250 | |
| 10678115 | 10678115 | PRJNA493828_P_NODE_1709_length_815_cov_88.513477_g1397_i0 | PRJNA493828 | 1709 | 815 | 88.513477 | 721.38483755 | Oleiharenicola sp. Vm1 | 3398393 | Bacteria | Bacteria | 1295 | 0 | NTclustered | gi|2912653302|gb|CP180537.1| | 3398393 | g1397 | i0 | 95.349 | 5.40368098159509 | 817 | 34 | 100 | 4 | 1 | 815 | 2998180 | 2997366 | Oleiharenicola sp. Vm1 chromosome, complete genome | blastn | 4404 | 1295 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Oleiharenicola | Oleiharenicola sp. Vm1 | |
| 10678556 | 10678556 | PRJNA493828_P_NODE_47449_length_202_cov_5.937984_g47030_i0 | PRJNA493828 | 47449 | 202 | 5.937984 | 11.99472768 | uncultured Verrucomicrobiota bacterium | 156588 | Bacteria | Bacteria | 366 | 5.530000000000001e-97 | NTclustered | gi|226525288|gb|FJ872373.1| | 156588 | g47030 | i0 | 99.502 | 408.366336633663 | 201 | 1 | 99 | 0 | 2 | 202 | 16839 | 16639 | Uncultured Verrucomicrobia bacterium clone 118 genomic sequence | blastn | 82490 | 366 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | uncultured Verrucomicrobiota bacterium | |||||
| 14503592 | 14503592 | PRJNA493828_P_NODE_40812_length_237_cov_6.975610_g40393_i0 | PRJNA493828 | 40812 | 237 | 6.97561 | 16.5321957 | uncultured Verrucomicrobiaceae bacterium | 257470 | Bacteria | Bacteria | 433 | 6.5e-117 | NTclustered | gi|220682444|gb|FJ543051.1| | 257470 | g40393 | i0 | 99.578 | 100.552742616034 | 237 | 1 | 100 | 0 | 1 | 237 | 1399 | 1163 | Uncultured Verrucomicrobiaceae bacterium clone B08-05F 16S ribosomal RNA gene, partial sequence | blastn | 23831 | 433 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | uncultured Verrucomicrobiaceae bacterium | ||
| 15777161 | 15777161 | PRJNA493828_P_NODE_1793_length_793_cov_22.438889_g1397_i1 | PRJNA493828 | 1793 | 793 | 22.438889 | 177.94038977 | Oleiharenicola sp. Vm1 | 3398393 | Bacteria | Bacteria | 1238 | 0 | NTclustered | gi|2912653302|gb|CP180537.1| | 3398393 | g1397 | i1 | 94.843 | 5.43253467843632 | 795 | 37 | 100 | 4 | 1 | 793 | 2998180 | 2997388 | Oleiharenicola sp. Vm1 chromosome, complete genome | blastn | 4308 | 1238 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Oleiharenicola | Oleiharenicola sp. Vm1 | |
| 18958176 | 18958176 | PRJNA493828_P_NODE_3355_length_584_cov_6.223092_g3000_i0 | PRJNA493828 | 3355 | 584 | 6.223092 | 36.34285728 | Opitutaceae | 134623 | Bacteria | Bacteria | 736 | 0 | NTclustered | gi|470483113|ref|NR_076574.1| | 107709 | g3000 | i0 | 89.384 | 100.864726027397 | 584 | 62 | 100 | 0 | 1 | 584 | 592 | 9 | Opitutus terrae strain PB90-1 23S ribosomal RNA gene, complete sequence | blastn | 58905 | 736 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus terrae | |
| 19600448 | 19600448 | PRJNA493828_P_NODE_17636_length_299_cov_1.380531_g17217_i0 | PRJNA493828 | 17636 | 299 | 1.380531 | 4.12778769 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 394 | 4.01e-105 | NTclustered | gi|2874253779|emb|OY969763.1| | 412056 | g17217 | i0 | 90.397 | 136.749163879599 | 302 | 25 | 100 | 4 | 1 | 299 | 3833590 | 3833290 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1 | blastn | 40888 | 394 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 19600573 | 19600573 | PRJNA493828_P_NODE_26276_length_266_cov_4.082902_g25857_i0 | PRJNA493828 | 26276 | 266 | 4.082902 | 10.86051932 | Luteolibacter sp. LG18 | 2819286 | Bacteria | Bacteria | 460 | 3.41e-125 | NTclustered | gi|2585939279|dbj|AP024600.1| | 2819286 | g25857 | i0 | 98.106 | 276.913533834586 | 264 | 5 | 99 | 0 | 1 | 264 | 2218705 | 2218442 | Luteolibacter sp. LG18 DNA, complete genome | blastn | 73659 | 460 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter sp. LG18 | |
| 21508367 | 21508367 | PRJNA493828_P_NODE_16237_length_309_cov_6.207627_g15818_i0 | PRJNA493828 | 16237 | 309 | 6.207627 | 19.18156743 | Opitutus | 178440 | Bacteria | Bacteria | 460 | 4.05e-125 | NTclustered | gi|470483113|ref|NR_076574.1| | 107709 | g15818 | i0 | 93.569 | 76.0711974110032 | 311 | 16 | 100 | 3 | 1 | 309 | 705 | 1013 | Opitutus terrae strain PB90-1 23S ribosomal RNA gene, complete sequence | blastn | 23506 | 460 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus terrae | |
| 21508379 | 21508379 | PRJNA493828_P_NODE_16917_length_304_cov_4.887446_g16498_i0 | PRJNA493828 | 16917 | 304 | 4.887446 | 14.85783584 | Verrucomicrobiota | 74201 | Bacteria | Bacteria | 274 | 5.55e-69 | NTclustered | gi|2874254065|emb|OY970130.1| | 412056 | g16498 | i0 | 83.117 | 121.378289473684 | 308 | 44 | 99 | 8 | 1 | 303 | 5152540 | 5152844 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 | blastn | 36899 | 274 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 23427253 | 23427253 | PRJNA493828_P_NODE_36499_length_245_cov_0.895349_g36080_i0 | PRJNA493828 | 36499 | 245 | 0.895349 | 2.19360505 | Oleiharenicola sp. Vm1 | 3398393 | Bacteria | Bacteria | 228 | 3.4199999999999995e-55 | NTclustered | gi|2912653302|gb|CP180537.1| | 3398393 | g36080 | i0 | 85.366 | 20.4489795918367 | 246 | 6 | 100 | 12 | 1 | 245 | 875719 | 875503 | Oleiharenicola sp. Vm1 chromosome, complete genome | blastn | 5010 | 228 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Oleiharenicola | Oleiharenicola sp. Vm1 | |
| 23427478 | 23427478 | PRJNA493828_P_NODE_8279_length_391_cov_2.374214_g7864_i0 | PRJNA493828 | 8279 | 391 | 2.374214 | 9.28317674 | Fontisphaera persica | 2974023 | Bacteria | Bacteria | 497 | 3.99e-136 | NTclustered | gi|2439237958|gb|CP116615.1| | 2974023 | g7864 | i0 | 89.717 | 249.375959079284 | 389 | 40 | 99 | 0 | 1 | 389 | 3862128 | 3861740 | Fontisphaera persica strain B-154 chromosome, complete genome | blastn | 97506 | 497 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Limisphaerales | Fontisphaeraceae | Fontisphaera | Fontisphaera persica | |
| 24058528 | 24058528 | PRJNA493828_P_NODE_40699_length_238_cov_2.654545_g40280_i0 | PRJNA493828 | 40699 | 238 | 2.654545 | 6.3178171 | Akkermansia | 239934 | Bacteria | Bacteria | 440 | 3.899999999999999e-119 | NTclustered | gi|1888387165|gb|CP058562.1| | 239935 | g40280 | i0 | 100 | 296 | 238 | 0 | 100 | 0 | 1 | 238 | 138160 | 137923 | Akkermansia muciniphila strain AK32 chromosome, complete genome | blastn | 70448 | 440 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansia | Akkermansia muciniphila | |
| 24700795 | 24700795 | PRJNA493828_P_NODE_37880_length_243_cov_1.423529_g37461_i0 | PRJNA493828 | 37880 | 243 | 1.423529 | 3.45917547 | Opitutus sp. VeGlc2 | 134634 | Bacteria | Bacteria | 433 | 6.69e-117 | NTclustered | gi|164510706|emb|AJ966885.1| | 134634 | g37461 | i0 | 99.167 | 210.98353909465 | 240 | 2 | 99 | 0 | 1 | 240 | 2759 | 2520 | Opitutus sp. VeGlc2 16S rRNA gene (partial), 23S rRNA gene, tRNA-Ala gene, tRNA-Ile gene, ITS1 and ITS2, strain DSM 11246 | blastn | 51269 | 433 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus sp. VeGlc2 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;