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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA493828" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA493828 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5578146 5578146 PRJNA493828_P_NODE_20805_length_284_cov_4.123223_g20386_i0 PRJNA493828 20805 284 4.123223 11.70995332 Gromochytrium mamkaevae 1486924 Fungi Fungi 78.7 4.33e-10   NTclustered gi|612507318|gb|KF586842.1| 1486924 g20386 i0 97.778 4.83450704225352 45 1 16 0 237 281 6131 6175 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1373 78.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
6852090 6852090 PRJNA493828_P_NODE_12346_length_330_cov_70.416342_g11927_i0 PRJNA493828 12346 330 70.416342 232.3739286 Rhizophlyctis rosea 64517 Fungi Fungi 599 8.849999999999995e-167   NTclustered gi|82398309|gb|DQ273787.1| 64517 g11927 i0 99.694 84.430303030303 327 1 99 0 1 327 2280 1954 Rhizophlyctis rosea isolate AFTOL-ID 43 28S ribosomal RNA gene, partial sequence blastn 27862 599 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea
8759281 8759281 PRJNA493828_P_NODE_11387_length_341_cov_42.208955_g10968_i0 PRJNA493828 11387 341 42.208955 143.93253655 root 1 Root_unresolved Root_unresolved 350 1.0200000000000001e-91   NTclustered gi|1866582754|gb|MT730929.1| 64517 g10968 i0 98.98 84.8709677419355 196 0 90 1 4 197 1423 1618 Rhizophlyctis rosea isolate KP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 28941 350 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea
10678190 10678190 PRJNA493828_P_NODE_21969_length_280_cov_4.043478_g21550_i0 PRJNA493828 21969 280 4.043478 11.3217384 Harpochytrium sp. JEL196 1485251 Fungi Fungi 226 1.4399999999999994e-54   NTclustered gi|675391975|gb|KJ668089.1| 1485251 g21550 i0 82.206 100.828571428571 281 33 99 14 4 280 1807 1540 Harpochytrium sp. JEL196 28S ribosomal RNA gene, partial sequence blastn 28232 226 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales Harpochytriaceae Harpochytrium Harpochytrium sp. JEL196
13228784 13228784 PRJNA493828_P_NODE_45931_length_211_cov_5.840580_g45512_i0 PRJNA493828 45931 211 5.84058 12.3236238 Batrachochytrium dendrobatidis 109871 Fungi Fungi 248 2.2e-61   NTclustered gi|2897841418|gb|CP161937.1| 109871 g45512 i0 87.793 108.625592417062 213 24 100 2 1 211 40870 40658 Batrachochytrium dendrobatidis strain JEL423 chromosome 15 blastn 22920 248 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
18958276 18958276 PRJNA493828_P_NODE_45515_length_214_cov_11.836879_g45096_i0 PRJNA493828 45515 214 11.836879 25.33092106 Rhizophlyctis 64515 Fungi Fungi 355 1.28e-93   NTclustered gi|1866582754|gb|MT730929.1| 64517 g45096 i0 99.487 91.107476635514 195 1 91 0 17 211 1476 1282 Rhizophlyctis rosea isolate KP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19497 355 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea
19600374 19600374 PRJNA493828_P_NODE_13116_length_322_cov_1.546185_g12697_i0 PRJNA493828 13116 322 1.546185 4.9787157 Dendrochytridium crassum 1352835 Fungi Fungi 119 2.94e-22   NTclustered gi|82398285|gb|DQ273785.1| 1352835 g12697 i0 87.379 4.03416149068323 103 13 32 0 4 106 1982 1880 Dendrochytridium crassum isolate AFTOL-ID 41 28S ribosomal RNA gene, partial sequence blastn 1299 119 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Dendrochytridium Dendrochytridium crassum
19600757 19600757 PRJNA493828_P_NODE_3896_length_548_cov_3.378947_g3518_i0 PRJNA493828 3896 548 3.378947 18.51662956 Synchytrium sp. 1971732 Fungi Fungi 93.5 3.18e-14   NTclustered gi|1168020523|gb|KY800404.1| 1971732 g3518 i0 83.168 0.786496350364963 101 17 18 0 424 524 906 1006 Synchytrium sp. voucher BPI 893319 large subunit ribosomal RNA gene, partial sequence blastn 431 93.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;