RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA493828" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 11 ✖

bioproject 1

  • PRJNA493828 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
474975 474975 PRJNA493828_P_NODE_44121_length_226_cov_2.830065_g43702_i0 PRJNA493828 44121 226 2.830065 6.3959469 Chlorosarcinopsis eremi 332213 Plants Plants 416 6.189999999999998e-112   NTclustered gi|1642525901|ref|NC_042250.1| 332213 g43702 i0 100 134.561946902655 225 0 99 0 1 225 131358 131134 Chlorosarcinopsis eremi culture UTEX:1186 chloroplast, complete genome blastn 30411 416 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlorosarcinales Chlorosarcinaceae Chlorosarcinopsis Chlorosarcinopsis eremi
1106655 1106655 PRJNA493828_P_NODE_7601_length_406_cov_12.834835_g7186_i0 PRJNA493828 7601 406 12.834835 52.1094301 Eukaryota 2759 Plants Plants 747 0   NTclustered gi|1201359271|gb|MF040793.1| 3078 g7186 i0 100 100.036945812808 404 0 99 0 3 406 50 453 Auxenochlorella pyrenoidosa isolate HITH6 18S ribosomal RNA gene, partial sequence blastn 40615 747 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
3657588 3657588 PRJNA493828_P_NODE_19683_length_288_cov_14.055814_g19264_i0 PRJNA493828 19683 288 14.055814 40.48074432 Eukaryota 2759 Plants Plants 527 3.63e-145   NTclustered gi|1201359270|gb|MF040792.1| 3078 g19264 i0 99.653 100 288 1 100 0 1 288 79 366 Auxenochlorella pyrenoidosa isolate HIT9 18S ribosomal RNA gene, partial sequence blastn 28800 532 0.990601503759398 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
4301809 4301809 PRJNA493828_P_NODE_44624_length_222_cov_5.557047_g44205_i0 PRJNA493828 44624 222 5.557047 12.33664434 Chlamydomonas noctigama 28456 Plants Plants 329 8.12e-86   NTclustered gi|17028277|gb|L43353.1|CRECPRRNLD 28456 g44205 i0 93.665 129.662162162162 221 12 99 1 1 221 1691 1473 Chlamydomonas geitleri chloroplast large subunit ribosomal RNA (rrnL) gene blastn 28785 329 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas noctigama
5578544 5578544 PRJNA493828_P_NODE_48265_length_198_cov_5.568000_g47846_i0 PRJNA493828 48265 198 5.568 11.02464 Chloroidium ellipsoideum 63676 Plants Plants 191 3.49e-44   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g47846 i0 93.701 29.7323232323232 127 8 64 0 4 130 3793 3667 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 5887 191 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
6210011 6210011 PRJNA493828_P_NODE_34885_length_247_cov_1.545977_g34466_i0 PRJNA493828 34885 247 1.545977 3.81856319 Trebouxiophyceae 75966 Plants Plants 305 1.55e-78   NTclustered gi|725650801|ref|NC_025532.1| 3102 g34466 i0 90.476 526.676113360324 231 22 94 0 15 245 122091 121861 Ettlia pseudoalveolaris culture-collection UTEX:975 chloroplast, complete genome blastn 130089 305 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Parietochloris Parietochloris pseudoalveolaris
6210219 6210219 PRJNA493828_P_NODE_9685_length_365_cov_10.565068_g9267_i0 PRJNA493828 9685 365 10.565068 38.5624982 Eukaryota 2759 Plants Plants 647 0   NTclustered gi|1201359271|gb|MF040793.1| 3078 g9267 i0 98.634 91.6602739726027 366 3 100 2 1 365 1083 719 Auxenochlorella pyrenoidosa isolate HITH6 18S ribosomal RNA gene, partial sequence blastn 33456 652 0.992331288343558 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
11309907 11309907 PRJNA493828_P_NODE_7069_length_420_cov_1.443804_g6658_i0 PRJNA493828 7069 420 1.443804 6.0639768 Trebouxiophyceae 75966 Plants Plants 63.9 1.87e-5   NTclustered gi|371782132|emb|HE610164.1| 33092 g6658 i0 95 15.5452380952381 40 2 10 0 16 55 76 37 Koliella longiseta plastid partial 23S rRNA gene, strain SAG 470-1 blastn 6529 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
20232973 20232973 PRJNA493828_P_NODE_30976_length_253_cov_3.055556_g30557_i0 PRJNA493828 30976 253 3.055556 7.73055668 Chlamydomonadales 3042 Plants Plants 324 4.41e-84   NTclustered gi|66864302|gb|DQ015757.1| 158507 g30557 i0 89.804 74.1660079051383 255 22 100 4 1 253 3204 2952 Oogamochlamys gigantea strain SAG 44.91 26S ribosomal RNA gene, partial sequence blastn 18764 324 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Oogamochlamys Oogamochlamys gigantea
20876574 20876574 PRJNA493828_P_NODE_37397_length_244_cov_0.900585_g36978_i0 PRJNA493828 37397 244 0.900585 2.1974274 Chlorella variabilis 554065 Plants Plants 174 4.5e-39   NTclustered gi|552825898|ref|XM_005846851.1| 554065 g36978 i0 85.714 16.0450819672131 168 20 68 4 1 166 1266 1431 Chlorella variabilis hypothetical protein (CHLNCDRAFT_31463) mRNA, complete cds blastn 3915 174 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
22151544 22151544 PRJNA493828_P_NODE_47818_length_200_cov_7.007874_g47399_i0 PRJNA493828 47818 200 7.007874 14.015748 Haematococcus lacustris 44745 Plants Plants 220 4.5e-53   NTclustered gi|1279575454|gb|MF683078.1| 44745 g47399 i0 86.567 139.665 201 25 99 2 1 199 3475 3675 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 27933 220 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;