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contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJNA493827" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 17 ✖

bioproject 1

  • PRJNA493827 · 17 ✖

analysis 1

  • blastn · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1747766 1747766 PRJNA493827_P_NODE_37922_length_595_cov_2009.312261_g35753_i0 PRJNA493827 37922 595 2009.312261 11955.40795295 uncultured Methanoregula sp. 1005933 Archaea Archaea 1011 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g35753 i0 97.623 278.505882352941 589 14 99 0 7 595 3117883 3117295 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 165711 1011 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
2381047 2381047 PRJNA493827_P_NODE_228582_length_242_cov_0.911243_g226384_i0 PRJNA493827 228582 242 0.911243 2.20520806 root 1 Root_unresolved Root_unresolved 448 2.3799999999999995e-121   NTclustered gi|216917|dbj|D12983.1|PYWPOL 2261 g226384 i0 100 6 242 0 100 0 1 242 343 584 Pyrococcus furiosus pol gene for DNA polymerase, complete cds blastn 1452 448 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus
3023221 3023221 PRJNA493827_P_NODE_234663_length_241_cov_0.916667_g232465_i0 PRJNA493827 234663 241 0.916667 2.20916747 Halobacterium noricense 223182 Archaea Archaea 52.8 0.022   NTclustered gi|2168244610|gb|CP089468.1| 223182 g232465 i0 100 0.116182572614108 28 0 12 0 22 49 919412 919385 Halobacterium noricense strain JCM 15102 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium noricense
6850921 6850921 PRJNA493827_P_NODE_55426_length_475_cov_3.696517_g53234_i0 PRJNA493827 55426 475 3.696517 17.55845575 Methanobrevibacter olleyae 294671 Archaea Archaea 54.7 0.013   NTclustered gi|998157363|gb|CP014265.1| 294671 g53234 i0 90.476 0.0884210526315789 42 2 8 2 349 388 701659 701618 Methanobrevibacter olleyae strain YLM1 chromosome, complete genome blastn 42 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae
10033321 10033321 PRJNA493827_P_NODE_142008_length_287_cov_1.079439_g139810_i0 PRJNA493827 142008 287 1.079439 3.09798993 Candidatus Nitrosocosmicus 1826864 Archaea Archaea 514 2.82e-141   NTclustered gi|937513727|gb|CP012850.1| 1353260 g139810 i0 98.955 22.5087108013937 287 3 100 0 1 287 848628 848342 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 6460 514 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
13225877 13225877 PRJNA493827_P_NODE_219451_length_244_cov_0.900585_g217253_i0 PRJNA493827 219451 244 0.900585 2.1974274 uncultured Methanoregula sp. 1005933 Archaea Archaea 318 1.9699999999999998e-82   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g217253 i0 90.164 49.7745901639344 244 24 100 0 1 244 3096585 3096342 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 12145 318 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
15133379 15133379 PRJNA493827_P_NODE_203472_length_247_cov_0.885057_g201274_i0 PRJNA493827 203472 247 0.885057 2.18609079 Haloterrigena 121871 Archaea Archaea 52.8 0.022   NTclustered gi|284012950|gb|CP001860.1| 543526 g201274 i0 100 0.226720647773279 28 0 11 0 12 39 3071345 3071318 Haloterrigena turkmenica DSM 5511, complete genome blastn 56 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Haloterrigena Haloterrigena turkmenica
15773903 15773903 PRJNA493827_P_NODE_183333_length_251_cov_1.730337_g181135_i0 PRJNA493827 183333 251 1.730337 4.34314587 uncultured Methanoregula sp. 1005933 Archaea Archaea 111 3.7e-20   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g181135 i0 91.358 0.322709163346614 81 7 32 0 1 81 3092663 3092743 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 81 111 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
17682996 17682996 PRJNA493827_P_NODE_189614_length_250_cov_0.870056_g187416_i0 PRJNA493827 189614 250 0.870056 2.17514 Halorubrum 56688 Archaea Archaea 52.8 0.023   NTclustered gi|1041620700|dbj|AP017569.1| 29284 g187416 i0 94.118 0.272 34 2 14 0 136 169 1743150 1743183 Halorubrum trapanicum DNA, complete genome, strain: CBA1232 blastn 68 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum trapanicum
20231137 20231137 PRJNA493827_P_NODE_124396_length_306_cov_2.484979_g122198_i0 PRJNA493827 124396 306 2.484979 7.60403574 Pyrococcus 2260 Archaea Archaea 56.5 0.002   NTclustered gi|18980902|gb|AE009950.1| 186497 g122198 i0 90.698 0.401960784313726 43 2 14 2 149 191 1558384 1558344 Pyrococcus furiosus DSM 3638, complete genome blastn 123 56.5 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus
20231783 20231783 PRJNA493827_P_NODE_212596_length_245_cov_0.895349_g210398_i0 PRJNA493827 212596 245 0.895349 2.19360505 Halogeometricum 60846 Archaea Archaea 80.5 1.01e-10   NTclustered gi|1810666233|gb|CP048739.1| 60847 g210398 i0 89.062 1.7469387755102 64 7 26 0 27 90 3768555 3768492 Halogeometricum borinquense strain wsp4 chromosome, complete genome blastn 428 80.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halogeometricum Halogeometricum borinquense
20875808 20875808 PRJNA493827_P_NODE_84697_length_373_cov_3.283333_g82499_i0 PRJNA493827 84697 373 3.283333 12.24683209 uncultured archaeon 115547 Archaea Archaea 52.8 0.035   NTclustered gi|1148938192|gb|KY476683.1| 115547 g82499 i0 100 0.150134048257373 28 0 8 0 330 357 10671 10698 Uncultured archaeon clone rifcsphigho2_01_scaffold_8552_curated genomic sequence blastn 56 52.8 1 Archaea               uncultured archaeon
23425321 23425321 PRJNA493827_P_NODE_41179_length_567_cov_1.427126_g38996_i0 PRJNA493827 41179 567 1.427126 8.09180442 uncultured archaeon 115547 Archaea Archaea 56.5 0.004   NTclustered gi|765560206|gb|KP308707.1| 115547 g38996 i0 94.595 0.178130511463845 37 0 7 2 262 298 10611 10645 Uncultured archaeon clone gwa2_scaffold_17898 genomic sequence blastn 101 56.5 1 Archaea               uncultured archaeon
23425563 23425563 PRJNA493827_P_NODE_50819_length_500_cov_1.086651_g48629_i0 PRJNA493827 50819 500 1.086651 5.433255 uncultured Methanoregula sp. 1005933 Archaea Archaea 645 1.7599999999999993e-180   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g48629 i0 94.313 76.464 422 23 84 1 1 422 3123813 3124233 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 38232 645 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
24697072 24697072 PRJNA493827_P_NODE_172440_length_260_cov_1.700535_g170242_i0 PRJNA493827 172440 260 1.700535 4.421391 Halorubrum ezzemoulense 337243 Archaea Archaea 76.8 1.41e-9   NTclustered gi|1565814486|gb|CP034940.1| 337243 g170242 i0 84.706 22.1115384615385 85 4 33 7 122 206 595253 595178 Halorubrum ezzemoulense strain Fb21 chromosome, complete genome blastn 5749 76.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum ezzemoulense
24699484 24699484 PRJNA493827_P_NODE_63200_length_440_cov_28.869210_g61003_i0 PRJNA493827 63200 440 28.86921 127.024524 Nitrosopumilus oxyclinae 1959104 Archaea Archaea 54.7 0.012   NTclustered gi|1869222960|gb|CP026994.1| 1959104 g61003 i0 96.97 0.075 33 0 8 1 69 101 1404635 1404666 Nitrosopumilus oxyclinae strain HCE1 chromosome, complete genome blastn 33 54.7 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus oxyclinae
24699909 24699909 PRJNA493827_P_NODE_80120_length_385_cov_0.987179_g77922_i0 PRJNA493827 80120 385 0.987179 3.80063915 Halococcus dombrowskii 179637 Archaea Archaea 52.8 0.037   NTclustered gi|2221489803|gb|CP095005.1| 179637 g77922 i0 100 0.0727272727272727 28 0 7 0 183 210 496501 496528 Halococcus dombrowskii strain H4 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus dombrowskii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;