RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA493827" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA493827 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3657253 3657253 PRJNA493827_P_NODE_77823_length_391_cov_1.641509_g75625_i0 PRJNA493827 77823 391 1.641509 6.41830019 Metazoa 33208 Rotifera other_Eukaryota 717 0   NTclustered gi|37785582|gb|AY210469.1| 96448 g75625 i0 99.744 51.5038363171356 391 1 100 0 1 391 2249 1859 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 20138 717 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
5576040 5576040 PRJNA493827_P_NODE_24225_length_777_cov_5.924716_g22314_i0 PRJNA493827 24225 777 5.924716 46.03504332 Brachionus koreanus 1199090 Rotifera other_Eukaryota 340 1.48e-88   NTclustered gi|477541870|gb|KC603851.1| 1199090 g22314 i0 78.223 36.2702702702703 574 96 72 27 189 750 9615 10171 Brachionus sp. 'koreanus' chromosome I mitochondrion, complete sequence blastn 28182 340 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus koreanus
6847994 6847994 PRJNA493827_P_NODE_142046_length_287_cov_1.079439_g139848_i0 PRJNA493827 142046 287 1.079439 3.09798993 Philodina citrina 468664 Rotifera other_Eukaryota 276 1.45e-69   NTclustered gi|407227484|emb|FR856884.1| 468664 g139848 i0 84.589 29.6689895470383 292 30 99 10 3 287 1744 2027 Philodina citrina complete mitochondrial genome blastn 8515 276 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
14502679 14502679 PRJNA493827_P_NODE_81592_length_381_cov_1.500000_g79394_i0 PRJNA493827 81592 381 1.5 5.715 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 67.6 1.3e-6   NTclustered gi|1143271481|gb|KX822781.1| 104777 g79394 i0 100 1.95800524934383 36 0 9 0 124 159 6959 6994 Brachionus calyciflorus chromosome I mitochondrion, complete sequence blastn 746 67.6 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
15774398 15774398 PRJNA493827_P_NODE_206873_length_246_cov_1.335260_g204675_i0 PRJNA493827 206873 246 1.33526 3.2847396 Brachionus falcatus 392765 Rotifera other_Eukaryota 178 3.5099999999999993e-40   NTclustered gi|2615504964|gb|OR601541.1| 392765 g204675 i0 82.547 37.5772357723577 212 27 85 10 21 228 10437 10232 Brachionus falcatus chromosome 1 mitochondrion, complete sequence blastn 9244 178 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus falcatus
15776405 15776405 PRJNA493827_P_NODE_73953_length_402_cov_30.981763_g71755_i0 PRJNA493827 73953 402 30.981763 124.54668726 Lepadella patella 231622 Rotifera other_Eukaryota 555 2.41e-153   NTclustered gi|83285192|gb|DQ297739.1| 231622 g71755 i0 91.584 39.0845771144279 404 31 100 3 1 402 733 331 Lepadella patella 28S ribosomal RNA gene, partial sequence blastn 15712 555 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lepadellidae Lepadella Lepadella patella
22150785 22150785 PRJNA493827_P_NODE_93398_length_355_cov_1.290780_g91200_i0 PRJNA493827 93398 355 1.29078 4.582269 Brachionus patulus 160652 Rotifera other_Eukaryota 263 1.43e-65   NTclustered gi|213959405|gb|FJ426639.1| 160652 g91200 i0 80.609 27.2225352112676 361 52 99 14 2 355 29 378 Brachionus patulus voucher S. H. Cheng 010 16S ribosomal RNA gene, partial sequence; mitochondrial blastn 9664 263 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus patulus
24696379 24696379 PRJNA493827_P_NODE_141420_length_287_cov_1.845794_g139222_i0 PRJNA493827 141420 287 1.845794 5.29742878 Keratella tropica 885372 Rotifera other_Eukaryota 259 1.46e-64   NTclustered gi|308156993|gb|GQ890458.1| 885372 g139222 i0 84.307 9.198606271777 274 33 94 7 1 269 46 314 Keratella tropica isolate DNA101 large subunit ribosomal RNA gene, partial sequence blastn 2640 259 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Keratella Keratella tropica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;