RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA493827" and tax_phylum = "Prasinodermophyta"

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tax_superkingdom 1

tax_phylum 1

  • Prasinodermophyta · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA493827 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23423099 23423099 PRJNA493827_P_NODE_154599_length_275_cov_3.871287_g152401_i0 PRJNA493827 154599 275 3.871287 10.64603925 Verdigellas peltata 542676 Plants Plants 196 1.1e-45   NTclustered gi|1031917306|ref|NC_030220.1| 542676 g152401 i0 82.667 73.16 225 35 81 4 1 223 56296 56074 Verdigellas peltata LAF:8-26-12-6-1 chloroplast blastn 20119 196 1 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Palmophyllales Palmophyllaceae Verdigellas Verdigellas peltata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;