RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA493827" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA493827 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22147322 22147322 PRJNA493827_P_NODE_159358_length_271_cov_1.919192_g157160_i0 PRJNA493827 159358 271 1.919192 5.20101032 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 54.7 0.007   NTclustered gi|2806458868|ref|XM_068503678.1| 1144522 g157160 i0 100 0.107011070110701 29 0 11 0 243 271 4418 4446 Tritrichomonas foetus uncharacterized protein (TRFO_24311), partial mRNA blastn 29 54.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
24696421 24696421 PRJNA493827_P_NODE_14360_length_1065_cov_84.307460_g12821_i0 PRJNA493827 14360 1065 84.30746 897.874449 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 62.1 1.8e-4   NTclustered gi|2806442743|ref|XM_068514405.1| 1144522 g12821 i0 88.462 0.0835680751173709 52 5 5 1 129 179 890 839 Tritrichomonas foetus Digestive cysteine proteinase 1 (LCP1), partial mRNA blastn 89 62.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;