RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA493827" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA493827 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5577790 5577790 PRJNA493827_P_NODE_92645_length_356_cov_2.166078_g90447_i0 PRJNA493827 92645 356 2.166078 7.71123768 Haplosporida sp. 2651821 SAR_Eukaryotes SAR_Eukaryotes 102 3.3e-17   NTclustered gi|1830680059|gb|MT334478.1| 2651821 g90447 i0 85.714 26.188202247191 98 13 27 1 8 104 555 458 Haplosporida sp. isolate Water_P3Pool_Feb small subunit ribosomal RNA gene, partial sequence blastn 9323 102 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida     Haplosporida sp.
9399058 9399058 PRJNA493827_P_NODE_170308_length_262_cov_1.555556_g168110_i0 PRJNA493827 170308 262 1.555556 4.07555672 Arachnula sp. CL12 862247 SAR_Eukaryotes SAR_Eukaryotes 219 2.2299999999999994e-52   NTclustered gi|302026178|gb|GQ377695.1| 862247 g168110 i0 85.116 86.5725190839695 215 30 82 2 1 214 299 512 Arachnula sp. CL12 elongation factor 1 alpha mRNA, partial cds blastn 22682 219 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae Arachnula Arachnula sp. CL12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;