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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA493827" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA493827 · 13 ✖

analysis 1

  • blastn · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
470553 470553 PRJNA493827_P_NODE_145521_length_283_cov_5.580952_g143323_i0 PRJNA493827 145521 283 5.580952 15.79409416 Synchytrium microbalum 1806994 Fungi Fungi 237 6.72e-58   NTclustered gi|1759163857|ref|XM_031171354.1| 1806994 g143323 i0 85.841 96.2685512367491 226 28 79 4 60 283 2954 2731 Synchytrium microbalum uncharacterized protein (SmJEL517_g05428), partial mRNA blastn 27244 237 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
4300465 4300465 PRJNA493827_P_NODE_68184_length_421_cov_4.795977_g65987_i0 PRJNA493827 68184 421 4.795977 20.19106317 Gromochytrium mamkaevae 1486924 Fungi Fungi 255 2.88e-63   NTclustered gi|612507318|gb|KF586842.1| 1486924 g65987 i0 87.225 53.3444180522565 227 26 53 3 197 421 5411 5636 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 22458 255 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
10033668 10033668 PRJNA493827_P_NODE_186448_length_251_cov_0.865169_g184250_i0 PRJNA493827 186448 251 0.865169 2.17157419 Fungi 4751 Fungi Fungi 265 2.68e-66   NTclustered gi|2432166554|ref|XM_053112251.1| 110093 g184250 i0 85.657 93.8286852589641 251 36 100 0 1 251 816 566 Polychytrium aggregatum P-loop containing nucleoside triphosphate hydrolase protein (BJ171DRAFT_518510), mRNA blastn 23551 265 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
10034325 10034325 PRJNA493827_P_NODE_52328_length_491_cov_3.543062_g50138_i0 PRJNA493827 52328 491 3.543062 17.39643442 Chytridium 4813 Fungi Fungi 108 1.01e-18   NTclustered gi|82398596|gb|DQ273831.1| 355335 g50138 i0 83.761 22.162932790224 117 15 23 4 377 491 1737 1623 Chytridium sp. JEL341 isolate AFTOL-ID 1531 28S ribosomal RNA gene, partial sequence blastn 10882 108 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Chytridium Chytridium sp. JEL341
11948758 11948758 PRJNA493827_P_NODE_126970_length_303_cov_1.926087_g124772_i0 PRJNA493827 126970 303 1.926087 5.83604361 Synchytrium sp. 1971732 Fungi Fungi 93.5 1.66e-14   NTclustered gi|1168020523|gb|KY800404.1| 1971732 g124772 i0 83.168 0.333333333333333 101 17 33 0 192 292 906 1006 Synchytrium sp. voucher BPI 893319 large subunit ribosomal RNA gene, partial sequence blastn 101 93.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium sp.
13227156 13227156 PRJNA493827_P_NODE_56411_length_470_cov_4.972292_g54218_i0 PRJNA493827 56411 470 4.972292 23.3697724 Polychytrium aggregatum 110093 Fungi Fungi 158 9.409999999999999e-34   NTclustered gi|2432162630|ref|XM_053112000.1| 110093 g54218 i0 79.476 29.2510638297872 229 41 49 3 218 446 523 301 Polychytrium aggregatum ribosomal protein L22/L17 (BJ171DRAFT_515986), mRNA blastn 13748 158 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
13227202 13227202 PRJNA493827_P_NODE_58291_length_461_cov_4.798969_g56095_i0 PRJNA493827 58291 461 4.798969 22.12324709 Fimicolochytrium jonesii 1396493 Fungi Fungi 128 7.23e-25   NTclustered gi|2432097581|ref|XM_053071233.1| 1396493 g56095 i0 82.313 4.22993492407809 147 26 32 0 287 433 229 83 Fimicolochytrium jonesii 30S ribosomal protein S30e (EV422DRAFT_541825), mRNA blastn 1950 128 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
15775616 15775616 PRJNA493827_P_NODE_43513_length_549_cov_1.455882_g41327_i0 PRJNA493827 43513 549 1.455882 7.99279218 Polychytrium aggregatum 110093 Fungi Fungi 379 2.18e-100   NTclustered gi|2432156890|ref|XM_053107738.1| 110093 g41327 i0 79.592 96.1876138433515 539 103 97 7 15 549 667 132 Polychytrium aggregatum 60S ribosomal protein L2 (BJ171DRAFT_425809), partial mRNA blastn 52807 379 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
17048044 17048044 PRJNA493827_P_NODE_156974_length_273_cov_2.230000_g154776_i0 PRJNA493827 156974 273 2.23 6.0879 Fimicolochytrium jonesii 1396493 Fungi Fungi 143 1.45e-29   NTclustered gi|2432058563|ref|XM_053065718.1| 1396493 g154776 i0 83.66 4.61172161172161 153 23 56 2 51 202 92 243 Fimicolochytrium jonesii 40S ribosomal protein S28 (EV422DRAFT_248144), mRNA blastn 1259 143 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
22147116 22147116 PRJNA493827_P_NODE_149818_length_280_cov_1.004831_g147620_i0 PRJNA493827 149818 280 1.004831 2.8135268 Polychytrium aggregatum 110093 Fungi Fungi 174 5.28e-39   NTclustered gi|2432155304|ref|XM_053111518.1| 110093 g147620 i0 80.169 1.41785714285714 237 44 85 2 1 237 72 305 Polychytrium aggregatum ribosomal L27e protein family-domain-containing protein (BJ171DRAFT_510919), mRNA blastn 397 174 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
23422804 23422804 PRJNA493827_P_NODE_141159_length_287_cov_13.934579_g138961_i0 PRJNA493827 141159 287 13.934579 39.99224173 Polychytrium aggregatum 110093 Fungi Fungi 121 7.169999999999999e-23   NTclustered gi|2432138713|ref|XM_053107478.1| 110093 g138961 i0 84.252 7.4808362369338 127 16 44 3 147 271 148 24 Polychytrium aggregatum large subunit ribosomal protein 29 (BJ171DRAFT_421272), partial mRNA blastn 2147 121 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
23424606 23424606 PRJNA493827_P_NODE_226299_length_242_cov_1.366864_g224101_i0 PRJNA493827 226299 242 1.366864 3.30781088 Gromochytrium mamkaevae 1486924 Fungi Fungi 100 7.68e-17   NTclustered gi|612507318|gb|KF586842.1| 1486924 g224101 i0 90.667 9.44628099173554 75 7 31 0 168 242 5967 5893 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 2286 100 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
24696031 24696031 PRJNA493827_P_NODE_126560_length_304_cov_1.129870_g124362_i0 PRJNA493827 126560 304 1.12987 3.4348048 Polychytrium aggregatum 110093 Fungi Fungi 121 7.659999999999999e-23   NTclustered gi|2432146664|ref|XM_053113161.1| 110093 g124362 i0 82.609 22.8092105263158 138 22 45 2 133 269 393 257 Polychytrium aggregatum 40S ribosomal protein S22-A (BJ171DRAFT_558627), partial mRNA blastn 6934 121 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;