RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA493827" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA493827 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1747593 1747593 PRJNA493827_P_NODE_32242_length_656_cov_4.425386_g30124_i0 PRJNA493827 32242 656 4.425386 29.03053216 Catenaria anguillulae 109876 Fungi Fungi 1151 0   NTclustered gi|1866582512|gb|MT730687.1| 109876 g30124 i0 98.328 87.844512195122 658 7 100 3 1 656 4751 4096 Catenaria anguillulae isolate JEL0194 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 57626 1151 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria anguillulae
4297678 4297678 PRJNA493827_P_NODE_16284_length_989_cov_6.629913_g14657_i0 PRJNA493827 16284 989 6.629913 65.56983957 Allomyces macrogynus 28583 Fungi Fungi 263 4.25e-65   NTclustered gi|11467573|ref|NC_001715.1| 28583 g14657 i0 85.455 11.2436804853387 275 15 71 14 408 662 801 532 Allomyces macrogynus mitochondrion, complete genome blastn 11120 263 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus
8123604 8123604 PRJNA493827_P_NODE_148787_length_280_cov_5.309179_g146589_i0 PRJNA493827 148787 280 5.309179 14.8657012 Catenophlyctis variabilis 945688 Fungi Fungi 508 1.27e-139   NTclustered gi|82398236|gb|DQ273780.1| 945688 g146589 i0 99.291 74.7214285714286 282 0 100 1 1 280 2823 2542 Catenophlyctis sp. JEL298 isolate AFTOL-ID 36 28S ribosomal RNA gene, partial sequence blastn 20922 508 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenophlyctis Catenophlyctis variabilis
8758605 8758605 PRJNA493827_P_NODE_35487_length_620_cov_3.946984_g33329_i0 PRJNA493827 35487 620 3.946984 24.4713008 Catenaria 109875 Fungi Fungi 1074 0   NTclustered gi|1866582512|gb|MT730687.1| 109876 g33329 i0 98.065 68.9870967741935 620 6 100 6 1 620 2845 3458 Catenaria anguillulae isolate JEL0194 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 42772 1074 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria anguillulae
11952481 11952481 PRJNA493827_P_NODE_73970_length_402_cov_5.863222_g71772_i0 PRJNA493827 73970 402 5.863222 23.57015244 Blastocladiella emersonii 4808 Fungi Fungi 267 1.26e-66   NTclustered gi|2440036|emb|X90411.1| 4808 g71772 i0 94.286 45.181592039801 175 8 44 2 228 402 3376 3204 B.emersonii DNA for 28S ribosomal RNA gene blastn 18163 267 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
15772748 15772748 PRJNA493827_P_NODE_129033_length_301_cov_1.298246_g126835_i0 PRJNA493827 129033 301 1.298246 3.90772046 Blastocladiella emersonii 4808 Fungi Fungi 298 3.26e-76   NTclustered gi|91242965|gb|DQ454114.1| 4808 g126835 i0 84.95 103.65780730897 299 39 99 6 1 297 365 659 Blastocladiella emersonii heat shock protein Hsp70-9 mRNA, complete cds blastn 31201 298 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
18324300 18324300 PRJNA493827_P_NODE_31175_length_670_cov_1.031826_g29074_i0 PRJNA493827 31175 670 1.031826 6.9132342 Blastocladiella emersonii 4808 Fungi Fungi 235 6.179999999999999e-57   NTclustered gi|209427640|ref|NC_011360.1| 4808 g29074 i0 89.362 13.1835820895522 188 18 57 2 88 274 14738 14924 Blastocladiella emersonii mitochondrion, complete genome blastn 8833 235 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
22150514 22150514 PRJNA493827_P_NODE_81998_length_380_cov_1.547231_g79800_i0 PRJNA493827 81998 380 1.547231 5.8794778 Blastocladiella emersonii 4808 Fungi Fungi 228 5.609999999999999e-55   NTclustered gi|684989|gb|L22497.1|BSIAHSP70X 4808 g79800 i0 82.836 3.78421052631579 268 33 68 9 67 326 2890 2628 Blastocladiella emersonii heat shock protein (hsp70) gene, complete cds blastn 1438 228 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;