contig_metadata
10 rows where analysis = "blastn", bioproject = "PRJNA493827" and tax_phylum = "Armatimonadota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3656268 | 3656268 | PRJNA493827_P_NODE_176303_length_257_cov_1.500000_g174105_i0 | PRJNA493827 | 176303 | 257 | 1.5 | 3.855 | Bacillati | 1783272 | Bacteria | Bacteria | 108 | 4.92e-19 | NTclustered | gi|510021827|emb|HF951689.1| | 1303518 | g174105 | i0 | 96.875 | 2.75875486381323 | 64 | 2 | 25 | 0 | 17 | 80 | 2136211 | 2136148 | Chthonomonas calidirosea T49 complete genome | blastn | 709 | 108 | 1 | Bacteria | Bacillati | Armatimonadota | Chthonomonadia | Chthonomonadales | Chthonomonadaceae | Chthonomonas | Chthonomonas calidirosea | ||
| 4298416 | 4298416 | PRJNA493827_P_NODE_197524_length_248_cov_1.462857_g195326_i0 | PRJNA493827 | 197524 | 248 | 1.462857 | 3.62788536 | Fimbriimonas ginsengisoli | 1005039 | Bacteria | Bacteria | 167 | 7.679999999999999e-37 | NTclustered | gi|663071213|gb|CP007139.1| | 661478 | g195326 | i0 | 82 | 0.806451612903226 | 200 | 32 | 80 | 4 | 1 | 198 | 850202 | 850399 | Fimbriimonas ginsengisoli Gsoil 348, complete genome | blastn | 200 | 167 | 1 | Bacteria | Bacillati | Armatimonadota | Fimbriimonadia | Fimbriimonadales | Fimbriimonadaceae | Fimbriimonas | Fimbriimonas ginsengisoli | ||
| 4934458 | 4934458 | PRJNA493827_P_NODE_92224_length_357_cov_1.686620_g90026_i0 | PRJNA493827 | 92224 | 357 | 1.68662 | 6.0212334 | Fimbriimonas | 1005038 | Bacteria | Bacteria | 512 | 1.29e-140 | NTclustered | gi|663071213|gb|CP007139.1| | 661478 | g90026 | i0 | 92.918 | 844.717086834734 | 353 | 24 | 99 | 1 | 1 | 352 | 27189 | 26837 | Fimbriimonas ginsengisoli Gsoil 348, complete genome | blastn | 301564 | 512 | 1 | Bacteria | Bacillati | Armatimonadota | Fimbriimonadia | Fimbriimonadales | Fimbriimonadaceae | Fimbriimonas | Fimbriimonas ginsengisoli | ||
| 6848339 | 6848339 | PRJNA493827_P_NODE_157986_length_272_cov_3.226131_g155788_i0 | PRJNA493827 | 157986 | 272 | 3.226131 | 8.77507632 | Fimbriimonadaceae bacterium | 2682144 | Bacteria | Bacteria | 381 | 2.8e-101 | NTclustered | gi|2076449834|gb|CP075365.1| | 2682144 | g155788 | i0 | 91.912 | 129.176470588235 | 272 | 22 | 100 | 0 | 1 | 272 | 1879639 | 1879368 | MAG: Fimbriimonadaceae bacterium isolate ACE_ARM2 chromosome | blastn | 35136 | 381 | 1 | Bacteria | Bacillati | Armatimonadota | Fimbriimonadia | Fimbriimonadales | Fimbriimonadaceae | Fimbriimonadaceae bacterium | |||
| 7482816 | 7482816 | PRJNA493827_P_NODE_132626_length_296_cov_22.008969_g130428_i0 | PRJNA493827 | 132626 | 296 | 22.008969 | 65.14654824 | Armatimonadota | 67819 | Bacteria | Bacteria | 339 | 1.88e-88 | NTclustered | gi|1996217993|dbj|AP021858.1| | 2608984 | g130428 | i0 | 88.612 | 192.003378378378 | 281 | 28 | 94 | 4 | 2 | 280 | 37100 | 37378 | Candidatus Nitrosymbiomonas proteolyticus DNA, complete genome | blastn | 56833 | 339 | 1 | Bacteria | Bacillati | Armatimonadota | Candidatus Nitrosymbiomonas | Candidatus Nitrosymbiomonas proteolyticus | |||||
| 8757941 | 8757941 | PRJNA493827_P_NODE_158027_length_272_cov_2.703518_g155829_i0 | PRJNA493827 | 158027 | 272 | 2.703518 | 7.35356896 | Fimbriimonas | 1005038 | Bacteria | Bacteria | 346 | 1.02e-90 | NTclustered | gi|663071213|gb|CP007139.1| | 661478 | g155829 | i0 | 89.781 | 253.121323529412 | 274 | 23 | 100 | 5 | 1 | 272 | 27864 | 28134 | Fimbriimonas ginsengisoli Gsoil 348, complete genome | blastn | 68849 | 348 | 0.994252873563218 | Bacteria | Bacillati | Armatimonadota | Fimbriimonadia | Fimbriimonadales | Fimbriimonadaceae | Fimbriimonas | Fimbriimonas ginsengisoli | ||
| 10033645 | 10033645 | PRJNA493827_P_NODE_183308_length_251_cov_1.764045_g181110_i0 | PRJNA493827 | 183308 | 251 | 1.764045 | 4.42775295 | Chthonomonas | 1077265 | Bacteria | Bacteria | 287 | 5.73e-73 | NTclustered | gi|526641997|ref|NR_103994.1| | 454171 | g181110 | i0 | 87.352 | 2.68525896414343 | 253 | 28 | 100 | 4 | 1 | 251 | 1226 | 1476 | Chthonomonas calidirosea strain T49 23S ribosomal RNA gene, complete sequence | blastn | 674 | 287 | 1 | Bacteria | Bacillati | Armatimonadota | Chthonomonadia | Chthonomonadales | Chthonomonadaceae | Chthonomonas | Chthonomonas calidirosea | ||
| 15772766 | 15772766 | PRJNA493827_P_NODE_129933_length_300_cov_1.237885_g127735_i0 | PRJNA493827 | 129933 | 300 | 1.237885 | 3.713655 | Fimbriimonas ginsengisoli | 1005039 | Bacteria | Bacteria | 185 | 2.6399999999999998e-42 | NTclustered | gi|663071213|gb|CP007139.1| | 661478 | g127735 | i0 | 79.11 | 11.4233333333333 | 292 | 43 | 93 | 9 | 22 | 300 | 2045300 | 2045014 | Fimbriimonas ginsengisoli Gsoil 348, complete genome | blastn | 3427 | 185 | 1 | Bacteria | Bacillati | Armatimonadota | Fimbriimonadia | Fimbriimonadales | Fimbriimonadaceae | Fimbriimonas | Fimbriimonas ginsengisoli | ||
| 15774191 | 15774191 | PRJNA493827_P_NODE_196573_length_249_cov_0.875000_g194375_i0 | PRJNA493827 | 196573 | 249 | 0.875 | 2.17875 | Fimbriimonas ginsengisoli | 1005039 | Bacteria | Bacteria | 172 | 1.66e-38 | NTclustered | gi|663071213|gb|CP007139.1| | 661478 | g194375 | i0 | 80 | 0.983935742971888 | 245 | 40 | 97 | 6 | 1 | 242 | 4652556 | 4652318 | Fimbriimonas ginsengisoli Gsoil 348, complete genome | blastn | 245 | 172 | 1 | Bacteria | Bacillati | Armatimonadota | Fimbriimonadia | Fimbriimonadales | Fimbriimonadaceae | Fimbriimonas | Fimbriimonas ginsengisoli | ||
| 19597013 | 19597013 | PRJNA493827_P_NODE_174776_length_258_cov_1.735135_g172578_i0 | PRJNA493827 | 174776 | 258 | 1.735135 | 4.4766483 | Fimbriimonas sp. | 1936159 | Bacteria | Bacteria | 346 | 9.619999999999999e-91 | NTclustered | gi|2778022393|emb|OZ123194.1| | 1936159 | g172578 | i0 | 91.016 | 566.313953488372 | 256 | 23 | 99 | 0 | 3 | 258 | 1688257 | 1688002 | MAG: Fimbriimonas sp. isolate MsE-30jul19-LR-01 genome assembly, chromosome: 1 | blastn | 146109 | 346 | 1 | Bacteria | Bacillati | Armatimonadota | Fimbriimonadia | Fimbriimonadales | Fimbriimonadaceae | Fimbriimonas | Fimbriimonas sp. |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;