RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA493827" and tax_phylum = "Acanthocephala"

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tax_superkingdom 1

tax_phylum 1

  • Acanthocephala · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA493827 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17046950 17046950 PRJNA493827_P_NODE_109014_length_327_cov_4.547244_g106816_i0 PRJNA493827 109014 327 4.547244 14.86948788 Metacanthocephalus ovicephalus 2982314 Acanthocephala other_Eukaryota 89.8 2.34e-13   NTclustered gi|2426930414|dbj|LC730868.1| 2982314 g106816 i0 81.416 1.51070336391437 113 18 34 3 5 115 6136 6247 Metacanthocephalus ovicephalus YK008 genes for 5'ETS, 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, 3'ETS partial and complete sequence blastn 494 89.8 1 Eukaryota Opisthokonta Metazoa Acanthocephala Palaeacanthocephala Echinorhynchida Leptorhynchoididae Metacanthocephalus Metacanthocephalus ovicephalus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;