RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA493827" and tax_kingdom = "Pararnavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA493827 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7483010 7483010 PRJNA493827_P_NODE_155846_length_274_cov_2.273632_g153648_i0 PRJNA493827 155846 274 2.273632 6.22975168 root 1 Root_unresolved Root_unresolved 486 5.8199999999999984e-133   NTclustered gi|1173658|gb|U36602.1|MLU36602 11786 g153648 i0 98.897 8.93430656934307 272 3 99 0 1 272 712 983 Murine leukemia virus gPr80 envelope polyprotein precursor (env) mRNA, complete cds blastn 2448 486 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
8757965 8757965 PRJNA493827_P_NODE_161447_length_269_cov_3.566327_g159249_i0 PRJNA493827 161447 269 3.566327 9.59341963 Gammaretrovirus 153135 Viruses Viruses 497 2.63e-136   NTclustered gi|82582299|gb|DQ241302.1| 356664 g159249 i0 100 94.7026022304833 269 0 100 0 1 269 207 475 Xenotropic MuLV-related virus VP42, complete genome blastn 25475 497 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Murine leukemia-related retroviruses
17683708 17683708 PRJNA493827_P_NODE_61134_length_449_cov_2.053191_g58937_i0 PRJNA493827 61134 449 2.053191 9.21882759 Gammaretrovirus 153135 Viruses Viruses 811 0   NTclustered gi|82582295|gb|DQ241301.1| 356663 g58937 i0 99.552 109.670378619154 446 1 99 1 4 449 8117 7673 Xenotropic MuLV-related virus VP35, complete genome blastn 49242 811 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Murine leukemia-related retroviruses
25331936 25331936 PRJNA493827_P_NODE_26140_length_742_cov_2.671151_g24187_i0 PRJNA493827 26140 742 2.671151 19.81994042 Gammaretrovirus 153135 Viruses Viruses 1371 0   NTclustered gi|82582295|gb|DQ241301.1| 356663 g24187 i0 100 100.06064690027 742 0 100 0 1 742 4079 3338 Xenotropic MuLV-related virus VP35, complete genome blastn 74245 1371 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Murine leukemia-related retroviruses

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;