RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA493827" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA493827 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11951050 11951050 PRJNA493827_P_NODE_233050_length_241_cov_0.916667_g230852_i0 PRJNA493827 233050 241 0.916667 2.20916747 uncultured delta proteobacterium 34034 Bacteria Bacteria 209 1.22e-49   NTclustered gi|2874253659|emb|OY969087.1| 34034 g230852 i0 83.784 0.921161825726141 222 34 92 2 1 221 6129154 6129374 MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 blastn 222 209 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
18324029 18324029 PRJNA493827_P_NODE_236255_length_237_cov_2.347561_g234056_i0 PRJNA493827 236255 237 2.347561 5.56371957 Persicimonas caeni 2292766 Bacteria Bacteria 87.9 5.83e-13   NTclustered gi|1695542189|gb|CP041186.1| 2292766 g234056 i0 82.857 2.62025316455696 105 11 53 6 75 175 2181949 2181848 Persicimonas caeni strain YN101 chromosome blastn 621 87.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
18325283 18325283 PRJNA493827_P_NODE_68395_length_421_cov_1.241379_g66198_i0 PRJNA493827 68395 421 1.241379 5.22620559 Microvenator marinus 2600177 Bacteria Bacteria 302 3.6500000000000004e-77   NTclustered gi|1722470586|gb|CP042467.1| 2600177 g66198 i0 82.899 131.622327790974 345 50 81 8 1 340 702514 702854 Microvenator marinus strain V1718 chromosome, complete genome blastn 55413 302 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;