RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA493632" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA493632 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1104079 1104079 PRJNA493632_P_NODE_708041_length_222_cov_6.375839_g704600_i0 PRJNA493632 708041 222 6.375839 14.15436258 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 300 6.37e-77   NTclustered gi|1663822467|gb|MH730839.1| 120572 g704600 i0 98.246 101.022522522523 171 3 100 0 1 171 874 1044 Peronospora bulbocapni voucher GLM64102 28S ribosomal RNA gene, partial sequence blastn 22427 300 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora bulbocapni
2377692 2377692 PRJNA493632_P_NODE_369342_length_278_cov_14.107317_g365903_i0 PRJNA493632 369342 278 14.107317 39.21834126 Salisapilia 983658 SAR_Eukaryotes SAR_Eukaryotes 198 3.1099999999999998e-46   NTclustered gi|1244022750|gb|MF979505.1| 758748 g365903 i0 89.241 55.2158273381295 158 17 57 0 4 161 638 481 Salisapilia elongata strain NBRC 100786 large subunit ribosomal RNA gene, partial sequence blastn 15350 198 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Salisapiliaceae Salisapilia Salisapilia elongata
6207517 6207517 PRJNA493632_P_NODE_716365_length_214_cov_4.730496_g712923_i0 PRJNA493632 716365 214 4.730496 10.12326144 Pseudoperonospora 143452 SAR_Eukaryotes SAR_Eukaryotes 390 3.519999999999999e-104   NTclustered gi|33520221|gb|AY273966.1| 162119 g712923 i0 99.533 99.9532710280374 214 1 100 0 1 214 265 52 Pseudoperonospora urticae large subunit ribosomal RNA gene, partial sequence blastn 21390 390 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora urticae
6845988 6845988 PRJNA493632_P_NODE_697686_length_228_cov_2.993548_g694245_i0 PRJNA493632 697686 228 2.993548 6.82528944 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 167 6.9599999999999994e-37   NTclustered gi|325195094|emb|FR825888.1| 890382 g694245 i0 92.308 0.513157894736842 117 9 51 0 112 228 6 122 Albugo laibachii Nc14, genomic contig CONTIG_2935_NC14_v4_521_59 blastn 117 167 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
9391857 9391857 PRJNA493632_P_NODE_437428_length_264_cov_2.376963_g433989_i0 PRJNA493632 437428 264 2.376963 6.27518232 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 433 7.37e-117   NTclustered gi|813199071|ref|XR_001099870.1| 695850 g433989 i0 96.212 102.25 264 10 100 0 1 264 1013 750 Saprolegnia parasitica CBS 223.65 28S ribosomal RNA rRNA blastn 26994 433 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
11307004 11307004 PRJNA493632_P_NODE_656269_length_241_cov_0.916667_g652828_i0 PRJNA493632 656269 241 0.916667 2.20916747 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|2308292368|gb|OK574295.1| 29920 g652828 i0 96.875 1.19502074688797 32 1 13 0 1 32 22176 22207 Phytophthora cactorum voucher CH9812411 mitochondrion, complete genome blastn 288 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
14486955 14486955 PRJNA493632_P_NODE_118772_length_424_cov_1.350427_g115361_i0 PRJNA493632 118772 424 1.350427 5.72581048 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 723 0   NTclustered gi|325194231|emb|FR825088.1| 890382 g115361 i0 97.412 1.72641509433962 425 10 100 1 1 424 1411 987 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 732 723 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
15769067 15769067 PRJNA493632_P_NODE_583673_length_246_cov_0.890173_g580232_i0 PRJNA493632 583673 246 0.890173 2.18982558 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 261 3.39e-65   NTclustered gi|145843803|gb|EF564000.1| 67593 g580232 i0 85.83 6.75609756097561 247 33 100 2 1 246 2212 2457 Phytophthora sojae cellulose synthase 4 (CES4) gene, complete cds blastn 1662 261 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
18317041 18317041 PRJNA493632_P_NODE_523095_length_250_cov_0.870056_g519656_i0 PRJNA493632 523095 250 0.870056 2.17514 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 150 7.799999999999999e-32   NTclustered gi|695405840|ref|XM_009525641.1| 67593 g519656 i0 79.279 3.276 222 40 88 5 32 250 402 184 Phytophthora sojae hypothetical protein mRNA blastn 819 150 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
20229911 20229911 PRJNA493632_P_NODE_573976_length_246_cov_8.849711_g570535_i0 PRJNA493632 573976 246 8.849711 21.77028906 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 226 1.2399999999999997e-54   NTclustered gi|33520221|gb|AY273966.1| 162119 g570535 i0 84.016 99.260162601626 244 29 96 9 1 235 58 300 Pseudoperonospora urticae large subunit ribosomal RNA gene, partial sequence blastn 24418 226 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora urticae
20860736 20860736 PRJNA493632_P_NODE_172857_length_365_cov_3.037671_g169429_i0 PRJNA493632 172857 365 3.037671 11.08749915 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 267 1.14e-66   NTclustered gi|695467116|ref|XM_009541261.1| 67593 g169429 i0 98.675 1.94246575342466 151 0 60 1 215 365 81 229 Phytophthora sojae hypothetical protein partial mRNA blastn 709 267 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;