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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA493632" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 6 ✖

bioproject 1

  • PRJNA493632 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3019626 3019626 PRJNA493632_P_NODE_721643_length_208_cov_110.844444_g718201_i0 PRJNA493632 721643 208 110.844444 230.55644352 Persicimonas caeni 2292766 Bacteria Bacteria 154 4.85e-33   NTclustered gi|1695542189|gb|CP041186.1| 2292766 g718201 i0 82.857 89.1346153846154 175 26 83 3 1 173 6456136 6455964 Persicimonas caeni strain YN101 chromosome blastn 18540 154 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
6846100 6846100 PRJNA493632_P_NODE_704646_length_226_cov_2.013072_g701205_i0 PRJNA493632 704646 226 2.013072 4.54954272 uncultured delta proteobacterium 34034 Bacteria Bacteria 401 1.7299999999999993e-107   NTclustered gi|430803059|gb|KC011168.1| 34034 g701205 i0 98.673 98.4380530973451 226 3 100 0 1 226 457 682 Uncultured delta proteobacterium clone bsc69 16S ribosomal RNA gene, partial sequence blastn 22247 401 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
11937567 11937567 PRJNA493632_P_NODE_163330_length_373_cov_17.470000_g159905_i0 PRJNA493632 163330 373 17.47 65.1631 uncultured delta proteobacterium 34034 Bacteria Bacteria 628 1.2899999999999998e-175   NTclustered gi|1597772012|gb|MK682782.1| 34034 g159905 i0 97.051 96.887399463807 373 11 100 0 1 373 5 377 Uncultured delta proteobacterium clone 13 16S ribosomal RNA gene, partial sequence blastn 36139 628 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
22136964 22136964 PRJNA493632_P_NODE_258858_length_310_cov_6.388186_g255422_i0 PRJNA493632 258858 310 6.388186 19.8033766 uncultured delta proteobacterium 34034 Bacteria Bacteria 95.3 4.74e-15   NTclustered gi|2874253999|emb|OY970324.1| 34034 g255422 i0 92.537 96.4064516129032 67 4 32 1 5 70 83878 83944 MAG: uncultured delta proteobacterium isolate MFD05502.bin.1.132 genome assembly, chromosome: 1 blastn 29886 95.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
23418640 23418640 PRJNA493632_P_NODE_573939_length_246_cov_10.173410_g570498_i0 PRJNA493632 573939 246 10.17341 25.0265886 uncultured delta proteobacterium 34034 Bacteria Bacteria 392 1.15e-104   NTclustered gi|927354504|gb|KT323038.1| 34034 g570498 i0 95.528 100.463414634146 246 10 99 1 1 245 92 337 Uncultured delta proteobacterium clone TGR_WLFZ-858 16S ribosomal RNA gene, partial sequence blastn 24714 392 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
24053314 24053314 PRJNA493632_P_NODE_2439_length_1979_cov_15.026233_g1731_i0 PRJNA493632 2439 1979 15.026233 297.36915107 Bacteria 2 Bacteria Bacteria 566 5.9e-156   NTclustered gi|2874253888|emb|OY970063.1| 34034 g1731 i0 74.964 149.947448206165 1370 274 68 57 454 1797 628052 629378 MAG: uncultured delta proteobacterium isolate MFD10007.bin.1.119 genome assembly, chromosome: 1 blastn 296746 569 0.994727592267135 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;