RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA493632" and tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 7 ✖

bioproject 1

  • PRJNA493632 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
463247 463247 PRJNA493632_P_NODE_400261_length_272_cov_1.547739_g396822_i0 PRJNA493632 400261 272 1.547739 4.20985008 Candidatus Stammera capleta 2608262 Bacteria Bacteria 54.7 0.007   NTclustered gi|1925240937|gb|CP043993.1| 2608262 g396822 i0 100 0.209558823529412 29 0 11 0 78 106 207469 207497 MAG: Candidatus Stammera capleta isolate 1 chromosome, complete genome blastn 57 54.7 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta
1742124 1742124 PRJNA493632_P_NODE_631282_length_243_cov_0.905882_g627841_i0 PRJNA493632 631282 243 0.905882 2.20129326 Candidatus Stammera capleta 2608262 Bacteria Bacteria 54.7 0.006   NTclustered gi|1925240899|gb|CP043975.1| 2608262 g627841 i0 100 0.234567901234568 29 0 12 0 14 42 150211 150239 MAG: Candidatus Stammera capleta isolate 1 chromosome, complete genome blastn 57 54.7 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta
5568709 5568709 PRJNA493632_P_NODE_507505_length_251_cov_0.865169_g504066_i0 PRJNA493632 507505 251 0.865169 2.17157419 Candidatus Westeberhardia cardiocondylae 1594731 Bacteria Bacteria 54.7 0.006   NTclustered gi|901692349|emb|LN774881.1| 1594731 g504066 i0 100 0.115537848605578 29 0 12 0 216 244 72609 72581 Candidatus Westeberhardia cardiocondylae genome assembly Wobs_v01, chromosome : I blastn 29 54.7 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Westeberhardia Candidatus Westeberhardia cardiocondylae
6839338 6839338 PRJNA493632_P_NODE_319866_length_289_cov_3.171296_g316427_i0 PRJNA493632 319866 289 3.171296 9.16504544 Candidatus Stammera capleta 2608262 Bacteria Bacteria 52.8 0.027   NTclustered gi|2676815323|gb|CP144799.1| 2608262 g316427 i0 100 0.0968858131487889 28 0 10 0 107 134 241270 241243 MAG: Candidatus Stammera capleta isolate KBEPEHBJ chromosome blastn 28 52.8 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta
10665108 10665108 PRJNA493632_P_NODE_301609_length_295_cov_1.387387_g298171_i0 PRJNA493632 301609 295 1.387387 4.09279165 Candidatus Stammera capleta 2608262 Bacteria Bacteria 54.7 0.008   NTclustered gi|1925240924|gb|CP043989.1| 2608262 g298171 i0 96.97 0.111864406779661 33 0 11 1 62 93 82607 82575 MAG: Candidatus Stammera capleta isolate 1 chromosome, complete genome blastn 33 54.7 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta
13215369 13215369 PRJNA493632_P_NODE_319371_length_289_cov_5.759259_g315932_i0 PRJNA493632 319371 289 5.759259 16.64425851 Blochmannia endosymbiont of Camponotus sp. 700220 Bacteria Bacteria 54.7 0.007   NTclustered gi|2246427109|gb|CP097757.1| 700220 g315932 i0 100 0.200692041522491 29 0 10 0 50 78 142248 142276 Blochmannia endosymbiont of Camponotus sp. strain C-024 chromosome, complete genome blastn 58 54.7 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Blochmanniella Blochmannia endosymbiont of Camponotus sp.
14494289 14494289 PRJNA493632_P_NODE_536232_length_249_cov_0.875000_g532793_i0 PRJNA493632 536232 249 0.875 2.17875 Candidatus Stammera capleta 2608262 Bacteria Bacteria 54.7 0.006   NTclustered gi|2676815306|gb|CP144785.1| 2608262 g532793 i0 90.476 0.168674698795181 42 2 16 2 206 246 27525 27565 MAG: Candidatus Stammera capleta isolate PEMIJDEI chromosome blastn 42 54.7 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;