RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA493244" and tax_phylum = "Thermotogota"

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tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA493244 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1729616 1729616 PRJNA493244_P_NODE_1066982_length_378_cov_5.675079_g1043865_i0 PRJNA493244 1066982 378 5.675079 21.45179862 Thermotoga profunda 1508420 Bacteria Bacteria 134 1.25e-26   NTclustered gi|597439398|dbj|AP014510.1| 1408160 g1043865 i0 91 23.5449735449735 100 8 26 1 123 222 2163821 2163723 Thermotoga profunda AZM34c06 DNA, complete genome blastn 8900 134 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga profunda
13853416 13853416 PRJNA493244_P_NODE_1464271_length_251_cov_3.363158_g1441146_i0 PRJNA493244 1464271 251 3.363158 8.44152658 Bacteria 2 Bacteria Bacteria 453 5.34e-123   NTclustered gi|2793119032|gb|CP126501.1| 44754 g1441146 i0 99.203 30 251 2 100 0 1 251 769975 770225 Fervidobacterium gondwanense strain CBS-13020 chromosome, complete genome blastn 7530 453 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium gondwanense
19581535 19581535 PRJNA493244_P_NODE_1436636_length_258_cov_7.791878_g1413511_i0 PRJNA493244 1436636 258 7.791878 20.10304524 Fervidobacterium nodosum 2424 Bacteria Bacteria 414 2.5999999999999995e-111   NTclustered gi|154152641|gb|CP000771.1| 381764 g1413511 i0 99.13 0.891472868217054 230 2 89 0 19 248 680374 680603 Fervidobacterium nodosum Rt17-B1, complete genome blastn 230 414 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium nodosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;