RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where analysis = "blastn", bioproject = "PRJNA493244" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 23 ✖

tax_clade 1

bioproject 1

  • PRJNA493244 · 23 ✖

analysis 1

  • blastn · 23 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
455794 455794 PRJNA493244_P_NODE_1475361_length_249_cov_1.117021_g1452236_i0 PRJNA493244 1475361 249 1.117021 2.78138229 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 167 7.709999999999999e-37   NTclustered gi|2031941177|emb|OD957840.1| 5763 g1452236 i0 79.747 2.36546184738956 237 42 95 4 6 241 435 204 Naegleria fowleri Karachi_NF001 strain blastn 589 167 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
3005500 3005500 PRJNA493244_P_NODE_1032963_length_392_cov_8.870091_g1009853_i0 PRJNA493244 1032963 392 8.870091 34.77075672 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 680 0   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g1009853 i0 99.73 36.5535714285714 371 1 95 0 22 392 3071 3441 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14329 680 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
3005922 3005922 PRJNA493244_P_NODE_1219443_length_322_cov_2.498084_g1196319_i0 PRJNA493244 1219443 322 2.498084 8.04383048 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 496 1.16e-135   NTclustered gi|290991132|ref|XM_002678144.1| 5762 g1196319 i0 94.953 3.74223602484472 317 14 98 2 7 322 1280 965 Naegleria gruberi ribosomal protein L3 (NAEGRDRAFT_79448), mRNA blastn 1205 496 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
3006931 3006931 PRJNA493244_P_NODE_1616163_length_217_cov_1.564103_g1593038_i0 PRJNA493244 1616163 217 1.564103 3.39410351 Vahlkampfia avara 74082 Heterolobosea other_Eukaryota 351 1.69e-92   NTclustered gi|2874368078|gb|PQ819802.1| 74082 g1593038 i0 98.98 45.9170506912442 196 2 90 0 1 196 208 13 Vahlkampfia avara strain CCAP 1588/1A small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 9964 351 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
3008585 3008585 PRJNA493244_P_NODE_898123_length_454_cov_8.409669_g875165_i0 PRJNA493244 898123 454 8.409669 38.17989726 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 658 0   NTclustered gi|290987137|ref|XM_002676234.1| 5762 g875165 i0 96.04 3.42511013215859 404 16 89 0 51 454 12 415 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_39446), mRNA blastn 1555 658 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
3650743 3650743 PRJNA493244_P_NODE_113703_length_1466_cov_6.197153_g106009_i0 PRJNA493244 113703 1466 6.197153 90.85026298 root 1 Root_unresolved Root_unresolved 63.9 6.95e-5   NTclustered gi|2031940665|emb|OD957732.1| 5763 g106009 i0 93.023 0.369713506139154 43 3 3 0 1422 1464 72 114 Naegleria fowleri Karachi_NF001 strain blastn 542 63.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
4284514 4284514 PRJNA493244_P_NODE_720604_length_555_cov_3.060729_g698226_i0 PRJNA493244 720604 555 3.060729 16.98704595 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 283 1.78e-71   NTclustered gi|2031941228|emb|OD957855.1| 5763 g698226 i0 96.491 0.308108108108108 171 6 31 0 376 546 411 241 Naegleria fowleri Karachi_NF001 strain blastn 171 283 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
6832953 6832953 PRJNA493244_P_NODE_1277906_length_303_cov_5.681818_g1254782_i0 PRJNA493244 1277906 303 5.681818 17.21590854 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 82.4 3.6e-11   NTclustered gi|2031941995|emb|OD958022.1| 5763 g1254782 i0 92.857 1.04950495049505 56 4 18 0 248 303 150 95 Naegleria fowleri Karachi_NF001 strain blastn 318 82.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
6833192 6833192 PRJNA493244_P_NODE_1393386_length_270_cov_1.794258_g1370261_i0 PRJNA493244 1393386 270 1.794258 4.8444966 Acrasis kona 1008807 Heterolobosea other_Eukaryota 272 1.74e-68   NTclustered gi|756877081|ref|NC_026286.1| 1008807 g1370261 i0 86.454 21.2074074074074 251 30 92 4 22 270 2717 2469 Acrasis kona culture-collection ATCC:MYA-3509 mitochondrion, complete genome blastn 5726 272 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
9385405 9385405 PRJNA493244_P_NODE_727768_length_550_cov_6.631902_g705359_i0 PRJNA493244 727768 550 6.631902 36.475461 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 717 0   NTclustered gi|290987474|ref|XM_002676402.1| 5762 g705359 i0 92.188 0.930909090909091 512 33 93 3 29 537 1 508 Naegleria gruberi NADH:ubiquinone oxidoreductase (NAEGRDRAFT_79997), partial mRNA blastn 512 717 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
10027852 10027852 PRJNA493244_P_NODE_1016768_length_399_cov_7.875740_g993668_i0 PRJNA493244 1016768 399 7.87574 31.4242026 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 80.5 1.75e-10   NTclustered gi|2031940840|emb|OD957768.1| 5763 g993668 i0 94.34 14.874686716792 53 1 13 2 1 52 131 182 Naegleria fowleri Karachi_NF001 strain blastn 5935 80.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
10658766 10658766 PRJNA493244_P_NODE_1159689_length_343_cov_2.000000_g1136565_i0 PRJNA493244 1159689 343 2 6.86 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 592 1.5499999999999996e-164   NTclustered gi|290991132|ref|XM_002678144.1| 5762 g1136565 i0 97.681 43.7405247813411 345 6 100 1 1 343 984 640 Naegleria gruberi ribosomal protein L3 (NAEGRDRAFT_79448), mRNA blastn 15003 592 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
10659026 10659026 PRJNA493244_P_NODE_1279629_length_303_cov_1.772727_g1256505_i0 PRJNA493244 1279629 303 1.772727 5.37136281 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 143 1.63e-29   NTclustered gi|2031943040|emb|OD958201.1| 5763 g1256505 i0 89.381 0.372937293729373 113 12 37 0 1 113 131 19 Naegleria fowleri Karachi_NF001 strain blastn 113 143 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
11934032 11934032 PRJNA493244_P_NODE_1348590_length_282_cov_204.678733_g1325466_i0 PRJNA493244 1348590 282 204.678733 577.19402706 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 204 6.789999999999998e-48   NTclustered gi|2031941688|emb|OD957957.1| 5763 g1325466 i0 86.813 1.22695035460993 182 24 65 0 1 182 189 8 Naegleria fowleri Karachi_NF001 strain blastn 346 204 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
17033674 17033674 PRJNA493244_P_NODE_1701514_length_203_cov_4.211268_g1678389_i0 PRJNA493244 1701514 203 4.211268 8.54887404 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 327 2.62e-85   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g1678389 i0 97.396 6.65024630541872 192 5 95 0 12 203 2020 2211 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1350 327 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
17033725 17033725 PRJNA493244_P_NODE_1718594_length_201_cov_4.000000_g1695469_i0 PRJNA493244 1718594 201 4 8.04 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 132 2.18e-26   NTclustered gi|2031941405|emb|OD957888.1| 5763 g1695469 i0 97.403 0.383084577114428 77 2 38 0 125 201 359 283 Naegleria fowleri Karachi_NF001 strain blastn 77 132 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
17034527 17034527 PRJNA493244_P_NODE_59874_length_1791_cov_6.126590_g55208_i0 PRJNA493244 59874 1791 6.12659 109.7272269 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 91.6 3.91e-13   NTclustered gi|2031941411|emb|OD957890.1| 5763 g55208 i0 71.816 0.206030150753769 369 89 20 8 1373 1738 8 364 Naegleria fowleri Karachi_NF001 strain blastn 369 91.6 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
18308108 18308108 PRJNA493244_P_NODE_1741635_length_191_cov_2.123077_g1718510_i0 PRJNA493244 1741635 191 2.123077 4.05507707 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 102 1.61e-17   NTclustered gi|2031940945|emb|OD957784.1| 5763 g1718510 i0 77.487 1 191 29 100 6 1 191 72 248 Naegleria fowleri Karachi_NF001 strain blastn 191 102 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
19581281 19581281 PRJNA493244_P_NODE_1328196_length_288_cov_3.374449_g1305072_i0 PRJNA493244 1328196 288 3.374449 9.71841312 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 54.7 0.007   NTclustered gi|2031941096|emb|OD957823.1| 5763 g1305072 i0 100 0.100694444444444 29 0 10 0 241 269 292 320 Naegleria fowleri Karachi_NF001 strain blastn 29 54.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
19581953 19581953 PRJNA493244_P_NODE_1604356_length_219_cov_2.943038_g1581231_i0 PRJNA493244 1604356 219 2.943038 6.44525322 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 278 2.94e-70   NTclustered gi|2031942276|emb|OD958089.1| 5763 g1581231 i0 92.04 0.917808219178082 201 11 89 2 24 219 1 201 Naegleria fowleri Karachi_NF001 strain blastn 201 278 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
20856530 20856530 PRJNA493244_P_NODE_1084377_length_371_cov_4.696774_g1061258_i0 PRJNA493244 1084377 371 4.696774 17.42503154 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 566 1.0199999999999999e-156   NTclustered gi|290990436|ref|XM_002677797.1| 5762 g1061258 i0 95.977 46.199460916442 348 14 94 0 24 371 240 587 Naegleria gruberi ribosomal protein S7 (NAEGRDRAFT_39045), mRNA blastn 17140 566 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
22134297 22134297 PRJNA493244_P_NODE_973358_length_419_cov_1.326816_g950293_i0 PRJNA493244 973358 419 1.326816 5.55935904 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 651 0   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g950293 i0 95.792 66.472553699284 404 16 96 1 16 419 2883 3285 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 27852 651 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
24683473 24683473 PRJNA493244_P_NODE_778500_length_519_cov_3.873362_g755893_i0 PRJNA493244 778500 519 3.873362 20.10274878 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 726 0   NTclustered gi|290991132|ref|XM_002678144.1| 5762 g755893 i0 93.306 35.9229287090559 493 31 95 2 1 493 491 1 Naegleria gruberi ribosomal protein L3 (NAEGRDRAFT_79448), mRNA blastn 18644 726 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;