RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA493244" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA493244 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4927909 4927909 PRJNA493244_P_NODE_1426684_length_261_cov_1.870000_g1403559_i0 PRJNA493244 1426684 261 1.87 4.8807 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.024   NTclustered gi|382930299|gb|JF831808.1| 1168218 g1403559 i0 100 2.25287356321839 28 0 11 0 234 261 229 202 Bonamia sp. ex Ostrea edulis clone SF05602BA1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 588 52.8 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida   Bonamia Bonamia sp. ex Ostrea edulis
15128005 15128005 PRJNA493244_P_NODE_1698252_length_204_cov_0.895105_g1675127_i0 PRJNA493244 1698252 204 0.895105 1.8260142 Minchinia 38078 SAR_Eukaryotes SAR_Eukaryotes 99 2.25e-16   NTclustered gi|41584536|gb|AY449710.1| 262226 g1675127 i0 85.714 49.828431372549 98 8 47 6 14 108 1549 1643 Minchinia tapetis small subunit ribosomal RNA gene, partial sequence blastn 10165 99 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida Haplosporidiidae Minchinia Minchinia tapetis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;