RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA493244" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA493244 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6202974 6202974 PRJNA493244_P_NODE_1471045_length_250_cov_1.296296_g1447920_i0 PRJNA493244 1471045 250 1.296296 3.24074 Lytechinus 7652 Echinodermata other_Eukaryota 52.8 0.023   NTclustered gi|2707422408|ref|XM_054902275.2| 7653 g1447920 i0 100 0.224 28 0 11 0 126 153 3062 3089 PREDICTED: Lytechinus pictus homeobox protein goosecoid-like (LOC129264401), mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
10659702 10659702 PRJNA493244_P_NODE_1553749_length_230_cov_7.082840_g1530624_i0 PRJNA493244 1553749 230 7.08284 16.290532 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 52.8 0.021   NTclustered gi|2037937370|ref|XM_041617728.1| 7654 g1530624 i0 90.476 0.182608695652174 42 1 18 3 32 72 967 928 PREDICTED: Lytechinus variegatus golgin subfamily A member 6-like protein 22 (LOC121422579), mRNA blastn 42 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;