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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA493244" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA493244 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6834127 6834127 PRJNA493244_P_NODE_1734546_length_195_cov_6.328358_g1711421_i0 PRJNA493244 1734546 195 6.328358 12.3402981 Orpinomyces sp. OUS1 301046 Fungi Fungi 163 7.46e-36   NTclustered gi|55859492|emb|AJ864475.1| 301046 g1711421 i0 83.06 93.0358974358974 183 27 92 4 1 180 4543 4724 Orpinomyces sp. OUS1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA, clone V5-1 blastn 18142 163 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Orpinomyces Orpinomyces sp. OUS1
9384861 9384861 PRJNA493244_P_NODE_377008_length_866_cov_8.067081_g359362_i0 PRJNA493244 377008 866 8.067081 69.86092146 Polychytrium aggregatum 110093 Fungi Fungi 370 2.12e-97   NTclustered gi|2432152064|ref|XM_053105682.1| 110093 g359362 i0 80.753 51.9376443418014 478 88 55 4 327 802 590 115 Polychytrium aggregatum ribosomal protein L10e/L16 (BJ171DRAFT_137240), mRNA blastn 44978 370 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
10658862 10658862 PRJNA493244_P_NODE_1201349_length_328_cov_3.355805_g1178225_i0 PRJNA493244 1201349 328 3.355805 11.0070404 Arkaya lepida 1134058 Fungi Fungi 95.3 5.05e-15   NTclustered gi|82398550|gb|DQ273814.1| 1134058 g1178225 i0 86.517 29.0121951219512 89 8 27 3 1 89 4540 4624 Karlingiomyces sp. JEL93 isolate AFTOL-ID 629 28S ribosomal RNA gene, partial sequence blastn 9516 95.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Arkaya Arkaya lepida
11933997 11933997 PRJNA493244_P_NODE_1335430_length_286_cov_2.715556_g1312306_i0 PRJNA493244 1335430 286 2.715556 7.76649016 Synchytrium decipiens 324676 Fungi Fungi 303 6.61e-78   NTclustered gi|82398555|gb|DQ273819.1| 324676 g1312306 i0 87.778 60.5734265734266 270 19 92 8 1 264 2482 2743 Synchytrium decipiens isolate AFTOL-ID 634 28S ribosomal RNA gene, partial sequence blastn 17324 303 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium decipiens
20857432 20857432 PRJNA493244_P_NODE_1488477_length_245_cov_23.782609_g1465352_i0 PRJNA493244 1488477 245 23.782609 58.26739205 Orpinomyces sp. OUS1 301046 Fungi Fungi 97.1 1.01e-15   NTclustered gi|55859492|emb|AJ864475.1| 301046 g1465352 i0 78.107 47.0857142857143 169 25 66 10 1 161 4552 4716 Orpinomyces sp. OUS1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA, clone V5-1 blastn 11536 97.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Orpinomyces Orpinomyces sp. OUS1
20859171 20859171 PRJNA493244_P_NODE_758137_length_531_cov_5.944681_g735620_i0 PRJNA493244 758137 531 5.944681 31.56625611 Operculomyces laminatus 382552 Fungi Fungi 176 2.96e-39   NTclustered gi|1866582516|gb|MT730691.1| 382552 g735620 i0 85.227 26.6497175141243 176 21 33 2 22 197 3791 3961 Operculomyces laminatus isolate JEL0223 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14151 176 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Operculomyces Operculomyces laminatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;