RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA493244" and tax_phylum = "Caldisericota"

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tax_superkingdom 1

tax_phylum 1

  • Caldisericota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA493244 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14485176 14485176 PRJNA493244_P_NODE_1733892_length_196_cov_2.474074_g1710767_i0 PRJNA493244 1733892 196 2.474074 4.84918504 Caldisericia bacterium 2758719 Bacteria Bacteria 137 4.55e-28   NTclustered gi|2621713026|emb|OY771555.1| 2758719 g1710767 i0 86.4 843.535714285714 125 17 64 0 62 186 889824 889700 MAG: Caldisericia bacterium isolate 048577e4-24bb-4769-bfae-6f43d69425f4 genome assembly, chromosome: 1 blastn 165333 137 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia       Caldisericia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;