RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA493234" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA493234 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23406667 23406667 PRJNA493234_S_NODE_1899_length_461_cov_1.762887_g1806_i0 PRJNA493234 1899 461 1.762887 8.12690907 Methyloversatilis sp. RAC08 1842540 Bacteria Bacteria 793 0   NTclustered gi|1059487190|gb|CP016448.1| 1842540 g1806 i0 99.315 262.44251626898 438 3 95 0 24 461 842258 842695 Methyloversatilis sp. RAC08 chromosome, complete genome blastn 120986 793 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Sterolibacteriaceae Methyloversatilis Methyloversatilis sp. RAC08

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;