RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA493234" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA493234 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
454257 454257 PRJNA493234_S_NODE_14841_length_273_cov_1.550000_g14748_i0 PRJNA493234 14841 273 1.55 4.2315 Mycoplasma wenyonii 65123 Bacteria Bacteria 494 3.46e-135   NTclustered gi|395455868|gb|CP003703.1| 1197325 g14748 i0 99.267 1 273 2 100 0 1 273 340789 341061 Mycoplasma wenyonii str. Massachusetts, complete genome blastn 273 494 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
13208366 13208366 PRJNA493234_S_NODE_6791_length_344_cov_2.059041_g6698_i0 PRJNA493234 6791 344 2.059041 7.08310104 Mycoplasma wenyonii 65123 Bacteria Bacteria 636 7.059999999999998e-178   NTclustered gi|395455868|gb|CP003703.1| 1197325 g6698 i0 100 1 344 0 100 0 1 344 612266 611923 Mycoplasma wenyonii str. Massachusetts, complete genome blastn 344 636 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
18305903 18305903 PRJNA493234_S_NODE_14975_length_272_cov_1.567839_g14882_i0 PRJNA493234 14975 272 1.567839 4.26452208 Mycoplasma wenyonii 65123 Bacteria Bacteria 311 3.73e-80   NTclustered gi|395455868|gb|CP003703.1| 1197325 g14882 i0 89.754 1.42279411764706 244 23 93 2 21 263 292105 292347 Mycoplasma wenyonii str. Massachusetts, complete genome blastn 387 311 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
18305969 18305969 PRJNA493234_S_NODE_16895_length_259_cov_1.672043_g16802_i0 PRJNA493234 16895 259 1.672043 4.33059137 Mycoplasma wenyonii 65123 Bacteria Bacteria 451 1.99e-122   NTclustered gi|395455868|gb|CP003703.1| 1197325 g16802 i0 98.069 1 259 5 100 0 1 259 213475 213733 Mycoplasma wenyonii str. Massachusetts, complete genome blastn 259 451 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;