RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA493234" and tax_phylum = "Basidiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA493234 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3005065 3005065 PRJNA493234_S_NODE_17243_length_257_cov_1.684783_g17150_i0 PRJNA493234 17243 257 1.684783 4.32989231 Cutaneotrichosporon oleaginosum 879819 Fungi Fungi 56.5 0.002   NTclustered gi|2741448235|ref|XM_018425684.2| 879819 g17150 i0 100 0.22568093385214 30 0 12 0 21 50 329 358 Cutaneotrichosporon oleaginosum uncharacterized protein (COLE_04017), partial mRNA blastn 58 56.5 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Trichosporonales Trichosporonaceae Cutaneotrichosporon Cutaneotrichosporon oleaginosum
6831927 6831927 PRJNA493234_S_NODE_16966_length_259_cov_1.075269_g16873_i0 PRJNA493234 16966 259 1.075269 2.78494671 Malassezia restricta 76775 Fungi Fungi 224 4.72e-54   NTclustered gi|1546637503|ref|XM_027630394.1| 76775 g16873 i0 99.194 0.741312741312741 124 1 71 0 75 198 279 156 Malassezia restricta uncharacterized protein (MRET_3767), partial mRNA blastn 192 224 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
11932937 11932937 PRJNA493234_S_NODE_17010_length_258_cov_2.529730_g16917_i0 PRJNA493234 17010 258 2.52973 6.5267034 Pleurotus ostreatus 5322 Fungi Fungi 377 3.41e-100   NTclustered gi|1919697605|ref|XM_036772885.1| 5322 g16917 i0 93.023 1 258 18 100 0 1 258 394 651 Pleurotus ostreatus Riboflavin synthase alpha chain (RIB5), partial mRNA blastn 258 377 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Pleurotaceae Pleurotus Pleurotus ostreatus
24680354 24680354 PRJNA493234_S_NODE_18760_length_250_cov_0.881356_g18667_i0 PRJNA493234 18760 250 0.881356 2.20339 Malassezia globosa 76773 Fungi Fungi 462 8.83e-126   NTclustered gi|1805972860|gb|CP046440.1| 76773 g18667 i0 100 41.204 250 0 100 0 1 250 1084 835 Malassezia globosa strain CBS7966 mitochondrion, complete genome blastn 10301 462 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia globosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;