RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA492406" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA492406 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15127172 15127172 PRJNA492406_P_NODE_10252_length_385_cov_1.480769_g9953_i0 PRJNA492406 10252 385 1.480769 5.70096065 Leptospira 171 Bacteria Bacteria 706 0   NTclustered gi|1275363544|gb|MF380463.1| 178 g9953 i0 99.74 100.963636363636 385 1 100 0 1 385 400 16 Leptospira sp. strain WFW58 16S ribosomal RNA gene, partial sequence blastn 38871 712 0.991573033707865 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira sp.
22128715 22128715 PRJNA492406_P_NODE_15378_length_320_cov_1.085020_g15079_i0 PRJNA492406 15378 320 1.08502 3.472064 Spirochaetota bacterium 2202144 Bacteria Bacteria 222 2.16e-53   NTclustered gi|2621703426|emb|OY760686.1| 2202144 g15079 i0 79.63 173.8375 324 54 99 11 1 318 1823 2140 MAG: Spirochaetota bacterium isolate b615e79e-4617-45ea-95f9-f7a736470f88 genome assembly, chromosome: 1 blastn 55628 222 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
24678527 24678527 PRJNA492406_P_NODE_23320_length_267_cov_1.237113_g23021_i0 PRJNA492406 23320 267 1.237113 3.30309171 Leptospira cinconiae 3235173 Bacteria Bacteria 472 1.5799999999999998e-128   NTclustered gi|2777192084|gb|CP162137.1| 3235173 g23021 i0 98.502 181.138576779026 267 4 100 0 1 267 754576 754842 Leptospira cinconiae strain WS58.C1 chromosome 1, complete sequence blastn 48364 472 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira cinconiae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;