RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA492406" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA492406 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3003258 3003258 PRJNA492406_P_NODE_25543_length_256_cov_1.213115_g25244_i0 PRJNA492406 25543 256 1.213115 3.1055744 Phycisphaera sp. 2030824 Bacteria Bacteria 296 9.74e-76   NTclustered gi|2323351239|gb|CP098402.1| 2030824 g25244 i0 90.043 497.13671875 231 19 90 4 2 231 3046480 3046707 MAG: Phycisphaera sp. isolate MAG12 chromosome blastn 127267 296 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae Phycisphaera Phycisphaera sp.
4279443 4279443 PRJNA492406_P_NODE_18364_length_291_cov_1.059633_g18065_i0 PRJNA492406 18364 291 1.059633 3.08353203 Planctomycetota bacterium 2026780 Bacteria Bacteria 117 9.43e-22   NTclustered gi|1949774590|gb|CP066225.1| 2026780 g18065 i0 90 28.6426116838488 90 9 31 0 193 282 4975449 4975538 Planctomycetota bacterium strain ZRK32 chromosome, complete genome blastn 8335 117 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
4927369 4927369 PRJNA492406_P_NODE_21724_length_275_cov_1.465347_g21425_i0 PRJNA492406 21724 275 1.465347 4.02970425 Planctomycetota 203682 Bacteria Bacteria 233 8.41e-57   NTclustered gi|1927964719|gb|CP054188.1| 2052181 g21425 i0 82.576 337.516363636364 264 46 96 0 1 264 585708 585971 MAG: Planctomycetia bacterium isolate H1_AMX1 chromosome, complete genome blastn 92817 233 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia       Planctomycetia bacterium
9380636 9380636 PRJNA492406_P_NODE_508_length_1602_cov_2.741007_g384_i0 PRJNA492406 508 1602 2.741007 43.91093214 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 1467 0   NTclustered gi|1927958621|gb|CP054186.1| 2026777 g384 i0 83.488 442.92759051186 1617 223 99 35 4 1602 1867802 1866212 MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome blastn 709570 1467 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
18303977 18303977 PRJNA492406_P_NODE_17175_length_301_cov_2.504386_g16876_i0 PRJNA492406 17175 301 2.504386 7.53820186 Phycisphaerales bacterium 2052180 Bacteria Bacteria 392 1.4499999999999994e-104   NTclustered gi|1958061316|gb|CP064987.1| 2052180 g16876 i0 91.034 325.102990033223 290 26 96 0 1 290 2192489 2192200 Phycisphaerales bacterium isolate Fred_18-Q3-R57-64_MAXAC.330_cln chromosome, complete genome blastn 97856 392 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
22128916 22128916 PRJNA492406_P_NODE_23678_length_265_cov_1.567708_g23379_i0 PRJNA492406 23678 265 1.567708 4.1544262 uncultured Planctomycetales bacterium 100371 Bacteria Bacteria 479 9.38e-131   NTclustered gi|673538887|gb|KJ611639.1| 100371 g23379 i0 99.245 99.3320754716981 265 2 100 0 1 265 156 420 Uncultured Planctomycetales bacterium clone Uvmin2_16 16S ribosomal RNA gene, partial sequence blastn 26323 479 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales     uncultured Planctomycetales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;