RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA492406" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA492406 · 14 ✖

analysis 1

  • blastn · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
452471 452471 PRJNA492406_P_NODE_19121_length_287_cov_2.261682_g18822_i0 PRJNA492406 19121 287 2.261682 6.49102734 Caenorhabditis elegans 6239 Nematoda Nematoda 525 1.2999999999999995e-144   NTclustered gi|687867634|emb|LK929784.1| 6239 g18822 i0 99.652 6.07317073170732 287 1 100 0 1 287 1408 1694 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0001286 blastn 1743 525 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
6829928 6829928 PRJNA492406_P_NODE_17606_length_297_cov_3.482143_g17307_i0 PRJNA492406 17606 297 3.482143 10.34196471 Pristionchus maxplancki 1317128 Nematoda Nematoda 167 9.44e-37   NTclustered gi|478487019|gb|KC491689.1| 1317128 g17307 i0 77.7 61.016835016835 287 52 94 7 20 297 317 34 Pristionchus maxplancki strain RS5594 large subunit ribosomal protein 27a (rpl27a) gene, partial cds blastn 18122 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus maxplancki
6830138 6830138 PRJNA492406_P_NODE_26846_length_251_cov_0.865169_g26547_i0 PRJNA492406 26846 251 0.865169 2.17157419 Caenorhabditis elegans 6239 Nematoda Nematoda 459 1.1499999999999996e-124   NTclustered gi|413004756|emb|Z81495.2| 6239 g26547 i0 99.602 92.9601593625498 251 1 100 0 1 251 1298 1548 Caenorhabditis elegans Cosmid F08G2, complete sequence blastn 23333 459 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
9380394 9380394 PRJNA492406_P_NODE_25088_length_258_cov_1.443243_g24789_i0 PRJNA492406 25088 258 1.443243 3.72356694 Caenorhabditis elegans 6239 Nematoda Nematoda 477 3.2699999999999985e-130   NTclustered gi|6919|emb|X03044.1| 6239 g24789 i0 100 10.9457364341085 258 0 100 0 1 258 1838 2095 Caenorhabditis elegans vit-5 gene for vitellogenin blastn 2824 477 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
10655932 10655932 PRJNA492406_P_NODE_11709_length_363_cov_2.789655_g11410_i0 PRJNA492406 11709 363 2.789655 10.12644765 Pristionchus pauli 376545 Nematoda Nematoda 268 3.1399999999999996e-67   NTclustered gi|150982019|gb|EF634598.1| 376545 g11410 i0 81.571 7.23415977961433 331 55 90 6 1 328 364 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2626 268 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
11931014 11931014 PRJNA492406_P_NODE_19110_length_287_cov_3.154206_g18811_i0 PRJNA492406 19110 287 3.154206 9.05257122 Caenorhabditis elegans 6239 Nematoda Nematoda 531 2.799999999999999e-146   NTclustered gi|1279388950|gb|MG551689.1| 6239 g18811 i0 100 98.595818815331 287 0 100 0 1 287 319 33 Caenorhabditis elegans isolate C.eleg_AM151 small subunit ribosomal RNA gene, partial sequence blastn 28297 531 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
11931055 11931055 PRJNA492406_P_NODE_20790_length_279_cov_2.766990_g20491_i0 PRJNA492406 20790 279 2.76699 7.7199021 Caenorhabditis elegans 6239 Nematoda Nematoda 505 1.6399999999999995e-138   NTclustered gi|28396069|gb|AY204194.1| 6239 g20491 i0 99.283 98.5878136200717 279 2 100 0 1 279 922 644 Caenorhabditis elegans clone yk805b2 nuclear receptor (NHR-108) pseudogene mRNA, complete sequence blastn 27506 505 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
11931177 11931177 PRJNA492406_P_NODE_26610_length_251_cov_0.865169_g26311_i0 PRJNA492406 26610 251 0.865169 2.17157419 Caenorhabditis elegans 6239 Nematoda Nematoda 464 2.47e-126   NTclustered gi|1972231355|ref|NM_059927.7| 6239 g26311 i0 100 3.0199203187251 251 0 100 0 1 251 660 910 Caenorhabditis elegans DFDF domain-containing protein (edc-3), mRNA blastn 758 464 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
16401827 16401827 PRJNA492406_P_NODE_22973_length_268_cov_4.230769_g22674_i0 PRJNA492406 22973 268 4.230769 11.33846092 Caenorhabditis 6237 Nematoda Nematoda 496 9.429999999999999e-136   NTclustered gi|1279388950|gb|MG551689.1| 6239 g22674 i0 100 101 268 0 100 0 1 268 542 809 Caenorhabditis elegans isolate C.eleg_AM151 small subunit ribosomal RNA gene, partial sequence blastn 27068 496 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
18304217 18304217 PRJNA492406_P_NODE_27655_length_249_cov_0.875000_g27356_i0 PRJNA492406 27655 249 0.875 2.17875 Strongyloides papillosus 174720 Nematoda Nematoda 222 1.62e-53   NTclustered gi|687022644|emb|LM525558.1| 174720 g27356 i0 82.869 43.6305220883534 251 39 100 4 1 249 232324 232572 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000004 blastn 10864 222 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
20854352 20854352 PRJNA492406_P_NODE_32977_length_200_cov_5.031496_g32678_i0 PRJNA492406 32977 200 5.031496 10.062992 Caenorhabditis elegans 6239 Nematoda Nematoda 370 4.22e-98   NTclustered gi|413006566|emb|Z92784.2| 6239 g32678 i0 100 36.885 200 0 100 0 1 200 28609 28808 Caenorhabditis elegans Cosmid F31C3, complete sequence blastn 7377 370 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22129261 22129261 PRJNA492406_P_NODE_9158_length_404_cov_10.770393_g8859_i0 PRJNA492406 9158 404 10.770393 43.51238772 Caenorhabditis elegans 6239 Nematoda Nematoda 736 0   NTclustered gi|413006566|emb|Z92784.2| 6239 g8859 i0 100 98.7821782178218 398 0 99 0 1 398 28117 28514 Caenorhabditis elegans Cosmid F31C3, complete sequence blastn 39908 736 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
24678644 24678644 PRJNA492406_P_NODE_28680_length_247_cov_0.885057_g28381_i0 PRJNA492406 28680 247 0.885057 2.18609079 Caenorhabditis elegans 6239 Nematoda Nematoda 451 1.88e-122   NTclustered gi|1972262238|ref|NM_065355.6| 6239 g28381 i0 99.595 3.0080971659919 247 1 100 0 1 247 1303 1549 Caenorhabditis elegans Cell division control protein 45 homolog (evl-18), partial mRNA blastn 743 451 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25325403 25325403 PRJNA492406_P_NODE_18000_length_293_cov_8.913636_g17701_i0 PRJNA492406 18000 293 8.913636 26.11695348 Caenorhabditis 6237 Nematoda Nematoda 540 4.76e-149   NTclustered gi|256561710|gb|FJ589010.1| 6239 g17701 i0 100 71.3447098976109 292 0 99 0 1 292 18 309 Caenorhabditis elegans isolate X5005 large subunit ribosomal RNA gene, partial sequence blastn 20904 540 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;