RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA492406" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Evosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA492406 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6830033 6830033 PRJNA492406_P_NODE_22286_length_272_cov_1.537688_g21987_i0 PRJNA492406 22286 272 1.537688 4.18251136 Acytostelium subglobosum 361139 Evosea other_Eukaryota 128 4.03e-25   NTclustered gi|831766330|ref|XM_012896306.1| 1410327 g21987 i0 79.459 7.76838235294118 185 34 67 4 33 215 534 352 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 2113 128 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
8105413 8105413 PRJNA492406_P_NODE_13887_length_336_cov_1.912548_g13588_i0 PRJNA492406 13887 336 1.912548 6.42616128 uncultured Soliformovum 2510342 Evosea other_Eukaryota 512 1.21e-140   NTclustered gi|1564356923|gb|MK443523.1| 2510342 g13588 i0 94.345 2.01190476190476 336 16 99 2 1 335 57 390 Uncultured Soliformovum clone OTUA345 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 676 512 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae   uncultured Soliformovum
10656160 10656160 PRJNA492406_P_NODE_21249_length_277_cov_2.676471_g20950_i0 PRJNA492406 21249 277 2.676471 7.41382467 Soliformovum expulsum 435423 Evosea other_Eukaryota 148 3.16e-31   NTclustered gi|260909293|gb|FJ766479.1| 435423 g20950 i0 77.273 13.7942238267148 286 43 100 18 1 277 83 355 Soliformovum expulsum culture-collection ATCC:48083 clone pool B 18S ribosomal RNA gene, partial sequence blastn 3821 148 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum expulsum
11930836 11930836 PRJNA492406_P_NODE_11470_length_366_cov_3.569966_g11171_i0 PRJNA492406 11470 366 3.569966 13.06607556 Phalansterium filosum 857046 Evosea other_Eukaryota 259 1.91e-64   NTclustered gi|300078501|gb|GU001163.1| 857046 g11171 i0 80.702 91.0355191256831 342 58 92 7 1 337 2889 2551 Phalansterium sp. EEG-2010/THA 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 33319 259 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium filosum
13206185 13206185 PRJNA492406_P_NODE_20831_length_279_cov_2.014563_g20532_i0 PRJNA492406 20831 279 2.014563 5.62063077 Acytostelium subglobosum 361139 Evosea other_Eukaryota 193 1.45e-44   NTclustered gi|831757457|ref|XM_012893582.1| 1410327 g20532 i0 82.511 18.9354838709677 223 35 79 4 1 221 641 861 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 5283 193 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
15127187 15127187 PRJNA492406_P_NODE_12452_length_354_cov_1.007117_g12153_i0 PRJNA492406 12452 354 1.007117 3.56519418 Entamoeba 5758 Evosea other_Eukaryota 344 4.93e-90   NTclustered gi|511087056|dbj|AK420796.1| 5759 g12153 i0 84.401 101.409604519774 359 46 100 7 1 354 405 758 Entamoeba histolytica cDNA clone: Xeh-010G06, actin, complete cds, strain: HM-1:IMSS blastn 35899 344 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;