RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA492406" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA492406 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
452398 452398 PRJNA492406_P_NODE_15681_length_316_cov_29.868313_g15382_i0 PRJNA492406 15681 316 29.868313 94.38386908 Gromochytrium mamkaevae 1486924 Fungi Fungi 80.5 1.36e-10   NTclustered gi|612507318|gb|KF586842.1| 1486924 g15382 i0 95.918 15.0537974683544 49 2 16 0 268 316 6131 6179 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4757 80.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
13206260 13206260 PRJNA492406_P_NODE_24391_length_261_cov_2.382979_g24092_i0 PRJNA492406 24391 261 2.382979 6.21957519 Polychytrium aggregatum 110093 Fungi Fungi 180 1.0499999999999999e-40   NTclustered gi|2432142218|ref|XM_053114797.1| 110093 g24092 i0 80.567 85.1954022988506 247 37 93 8 5 247 262 501 Polychytrium aggregatum ribosomal protein S13/S18-domain-containing protein (BJ171DRAFT_597985), partial mRNA blastn 22236 180 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
13206388 13206388 PRJNA492406_P_NODE_30591_length_244_cov_0.888889_g30292_i0 PRJNA492406 30591 244 0.888889 2.16888916 Polychytrium aggregatum 110093 Fungi Fungi 219 2.05e-52   NTclustered gi|2432130078|ref|XM_053109045.1| 110093 g30292 i0 82.787 13.4672131147541 244 42 100 0 1 244 879 1122 Polychytrium aggregatum P-loop containing nucleoside triphosphate hydrolase protein (BJ171DRAFT_484843), mRNA blastn 3286 219 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
20854342 20854342 PRJNA492406_P_NODE_32697_length_230_cov_2.464968_g32398_i0 PRJNA492406 32697 230 2.464968 5.6694264 Polychytrium aggregatum 110093 Fungi Fungi 86.1 2.02e-12   NTclustered gi|2432165340|ref|XM_053112172.1| 110093 g32398 i0 84.043 28.4130434782609 94 9 38 3 134 221 1003 910 Polychytrium aggregatum ribosomal protein L10-domain-containing protein (BJ171DRAFT_517673), mRNA blastn 6535 86.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;