RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA492406" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA492406 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14481463 14481463 PRJNA492406_P_NODE_8312_length_423_cov_1.760000_g8013_i0 PRJNA492406 8312 423 1.76 7.4448 Phototrophicus methaneseepsis 2710758 Bacteria Bacteria 442 2.0699999999999988e-119   NTclustered gi|1932369605|gb|CP062983.1| 2710758 g8013 i0 85.647 574.333333333333 425 56 99 4 1 422 2827480 2827902 Phototrophicus methaneseepsis strain ZRK33 chromosome, complete genome blastn 242943 442 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae Phototrophicus Phototrophicus methaneseepsis
18950857 18950857 PRJNA492406_P_NODE_8215_length_425_cov_1.866477_g7916_i0 PRJNA492406 8215 425 1.866477 7.93252725 Caldilinea 233191 Bacteria Bacteria 564 4.249999999999999e-156   NTclustered gi|470476010|ref|NR_076314.1| 133453 g7916 i0 90.588 529.461176470588 425 40 100 0 1 425 2113 2537 Caldilinea aerophila strain STL-6-O1 23S ribosomal RNA gene, complete sequence blastn 225021 564 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Caldilinea Caldilinea aerophila
22129025 22129025 PRJNA492406_P_NODE_28558_length_247_cov_1.471264_g28259_i0 PRJNA492406 28558 247 1.471264 3.63402208 uncultured Chloroflexota bacterium 166587 Bacteria Bacteria 156 1.65e-33   NTclustered gi|374850026|dbj|AP011646.1| 166587 g28259 i0 78.4 22.3198380566802 250 47 100 7 1 247 2529 2774 Uncultured Chloroflexi bacterium DNA, fosmid clone: JFF004_B01 blastn 5513 156 1 Bacteria   Bacillati Chloroflexota         uncultured Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;