RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA492406" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA492406 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3003075 3003075 PRJNA492406_P_NODE_17203_length_301_cov_1.609649_g16904_i0 PRJNA492406 17203 301 1.609649 4.84504349 Porospora cf. gigantea B 2853592 SAR_Eukaryotes SAR_Eukaryotes 71.3 7.73e-8   NTclustered gi|2806422240|ref|XM_068519222.1| 2853592 g16904 i0 90.566 2.30897009966777 53 5 18 0 160 212 417 365 MAG: Porospora cf. gigantea B uncharacterized protein (KVP17_002688), partial mRNA blastn 695 71.3 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Porosporidae Porospora Porospora cf. gigantea B
14481209 14481209 PRJNA492406_P_NODE_26712_length_251_cov_0.865169_g26413_i0 PRJNA492406 26712 251 0.865169 2.17157419 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 241 4.52e-59   NTclustered gi|1620142820|ref|XM_028677298.1| 85471 g26413 i0 91.429 118.486055776892 175 15 70 0 10 184 57 231 Plasmodium relictum ubiquitin-60S ribosomal protein L40, putative (PRELSG_1104600), partial mRNA blastn 29740 241 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
25325464 25325464 PRJNA492406_P_NODE_27160_length_250_cov_0.870056_g26861_i0 PRJNA492406 27160 250 0.870056 2.17514 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|124015288|gb|EF158096.1| 5833 g26861 i0 100 0.336 28 0 11 0 91 118 3135 3162 Plasmodium falciparum erythrocyte membrane protein 1 (IT4_var54) gene, complete cds blastn 84 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;