RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA492406" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA492406 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9380137 9380137 PRJNA492406_P_NODE_13248_length_344_cov_1.704797_g12949_i0 PRJNA492406 13248 344 1.704797 5.86450168 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 276 1.77e-69   NTclustered gi|2874253885|emb|OY970060.1| 171953 g12949 i0 81.395 4.06395348837209 344 59 100 4 1 344 2741969 2741631 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.4 genome assembly, chromosome: 1 blastn 1398 276 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
10656294 10656294 PRJNA492406_P_NODE_26769_length_251_cov_0.865169_g26470_i0 PRJNA492406 26769 251 0.865169 2.17157419 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 99 2.88e-16   NTclustered gi|2874254108|emb|OY970193.1| 171953 g26470 i0 89.61 27.1513944223108 77 8 43 0 175 251 6748374 6748450 MAG: uncultured Acidobacteriota bacterium isolate MFD09206.bin.1.42 genome assembly, chromosome: 1 blastn 6815 99 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
19578478 19578478 PRJNA492406_P_NODE_29856_length_245_cov_0.895349_g29557_i0 PRJNA492406 29856 245 0.895349 2.19360505 Acidobacteriota bacterium 1978231 Bacteria Bacteria 381 2.4799999999999995e-101   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g29557 i0 95.397 167.624489795918 239 11 98 0 7 245 4652295 4652057 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 41068 381 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
19578623 19578623 PRJNA492406_P_NODE_6236_length_480_cov_2.147420_g5937_i0 PRJNA492406 6236 480 2.14742 10.307616 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 651 0   NTclustered gi|2874253760|emb|OY969701.1| 2283092 g5937 i0 91.039 122.45 491 30 100 9 1 480 3176228 3176715 MAG: Pyrinomonadaceae bacterium isolate MFD04212.bin.c.1 genome assembly, chromosome: 1 blastn 58776 651 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
20854093 20854093 PRJNA492406_P_NODE_20557_length_281_cov_1.149038_g20258_i0 PRJNA492406 20557 281 1.149038 3.22879678 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 235 2.4e-57   NTclustered gi|2874253677|emb|OY969111.1| 171953 g20258 i0 82.9 23.6832740213523 269 38 94 5 2 266 142304 142040 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.3 genome assembly, chromosome: 1 blastn 6655 235 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
21501219 21501219 PRJNA492406_P_NODE_8157_length_426_cov_2.838527_g7858_i0 PRJNA492406 8157 426 2.838527 12.09212502 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 442 2.089999999999999e-119   NTclustered gi|2874254108|emb|OY970193.1| 171953 g7858 i0 85.648 237.532863849765 432 49 99 8 6 426 1689253 1689682 MAG: uncultured Acidobacteriota bacterium isolate MFD09206.bin.1.42 genome assembly, chromosome: 1 blastn 101189 442 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;