RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA492406" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 15 ✖

bioproject 1

  • PRJNA492406 · 15 ✖

analysis 1

  • blastn · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4927320 4927320 PRJNA492406_P_NODE_14904_length_324_cov_3.633466_g14605_i0 PRJNA492406 14904 324 3.633466 11.77242984 Eukaryota 2759 Plants Plants 577 4.0599999999999986e-160   NTclustered gi|1201359271|gb|MF040793.1| 3078 g14605 i0 98.765 93.9938271604938 324 4 100 0 1 324 406 83 Auxenochlorella pyrenoidosa isolate HITH6 18S ribosomal RNA gene, partial sequence blastn 30454 582 0.991408934707904 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
6830141 6830141 PRJNA492406_P_NODE_26906_length_250_cov_2.005650_g26607_i0 PRJNA492406 26906 250 2.00565 5.014125 Chlamydomonas moewusii 3054 Plants Plants 93.5 1.33e-14   NTclustered gi|397103|emb|X68913.1| 3054 g26607 i0 75 2.772 224 44 88 10 29 248 927 712 Chloroplast C.moewusii rrnL gene, exon 1 blastn 693 93.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas moewusii
9380096 9380096 PRJNA492406_P_NODE_11548_length_365_cov_2.818493_g11249_i0 PRJNA492406 11548 365 2.818493 10.28749945 Trebouxia sp. Jameos_1 2007186 Plants Plants 464 3.75e-126   NTclustered gi|1201080600|gb|MF192885.1| 2007186 g11249 i0 99.222 90.7753424657534 257 2 70 0 109 365 803 547 Trebouxia sp. Jameos_1 isolate ppJameos_1 large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 33133 464 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. Jameos_1
10656362 10656362 PRJNA492406_P_NODE_30089_length_244_cov_2.438596_g29790_i0 PRJNA492406 30089 244 2.438596 5.95017424 Trebouxia sp. A1-2 2608996 Plants Plants 91.6 4.66e-14   NTclustered gi|1825511251|gb|MN642622.1| 2608996 g29790 i0 88.312 2.38114754098361 77 8 31 1 137 212 86129 86205 Trebouxia sp. A1-2 mitochondrion, complete genome blastn 581 91.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. A1-2
11302497 11302497 PRJNA492406_P_NODE_7049_length_455_cov_1.910995_g6750_i0 PRJNA492406 7049 455 1.910995 8.69502725 Trebouxia 13786 Plants Plants 736 0   NTclustered gi|162134340|gb|EU123979.1| 160068 g6750 i0 95.824 125.621978021978 455 19 100 0 1 455 2051 2505 Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast blastn 57158 736 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
13206029 13206029 PRJNA492406_P_NODE_14031_length_334_cov_3.601533_g13732_i0 PRJNA492406 14031 334 3.601533 12.02912022 Chlamydomonas reinhardtii 3055 Plants Plants 422 2.08e-113   NTclustered gi|167449|gb|M11448.1|CRETBA2A 3055 g13732 i0 89.489 98.7994011976048 333 35 99 0 1 333 972 1304 Chlamydomonas reinhardtii alpha-2 tubulin gene, complete cds blastn 32999 422 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
13852764 13852764 PRJNA492406_P_NODE_10191_length_386_cov_1.476038_g9892_i0 PRJNA492406 10191 386 1.476038 5.69750668 Marvania 97104 Plants Plants 137 9.889999999999999e-28   NTclustered gi|2724824493|gb|PP746561.1| 97105 g9892 i0 79.512 8.48186528497409 205 33 52 8 65 266 1484 1286 Marvania geminata culture SAG:12.88 mitochondrion, complete genome blastn 3274 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Marvania Marvania geminata
17029483 17029483 PRJNA492406_P_NODE_11194_length_370_cov_3.683502_g10895_i0 PRJNA492406 11194 370 3.683502 13.628957400000001 Colemanosphaera angeleri 1454018 Plants Plants 148 4.36e-31   NTclustered gi|1861679643|gb|MN431475.1| 1454018 g10895 i0 80.5 30.8432432432432 200 33 53 6 134 329 14771 14968 Colemanosphaera angeleri strain FACHB-2363 mitochondrion, complete genome blastn 11412 148 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Colemanosphaera Colemanosphaera angeleri
17029536 17029536 PRJNA492406_P_NODE_13374_length_342_cov_7.985130_g13075_i0 PRJNA492406 13374 342 7.98513 27.3091446 Auxenochlorella protothecoides 3075 Plants Plants 130 1.45e-25   NTclustered gi|760445578|ref|XM_011401556.1| 3075 g13075 i0 88.679 2.41812865497076 106 12 31 0 185 290 105 210 Auxenochlorella protothecoides 40S ribosomal protein S11 partial mRNA blastn 827 130 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
17029966 17029966 PRJNA492406_P_NODE_31914_length_241_cov_0.916667_g31615_i0 PRJNA492406 31914 241 0.916667 2.20916747 Trebouxia lynnae 1825957 Plants Plants 385 1.88e-102   NTclustered gi|1812100161|ref|NC_045839.1| 1825957 g31615 i0 95.436 84.3651452282158 241 11 100 0 1 241 179606 179366 Trebouxia sp. TR9 chloroplast, partial genome blastn 20332 385 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
18304190 18304190 PRJNA492406_P_NODE_26335_length_251_cov_2.438202_g26036_i0 PRJNA492406 26335 251 2.438202 6.11988702 Auxenochlorella pyrenoidosa 3078 Plants Plants 435 1.93e-117   NTclustered gi|1201359271|gb|MF040793.1| 3078 g26036 i0 98.008 95.0796812749004 251 4 100 1 1 251 1446 1695 Auxenochlorella pyrenoidosa isolate HITH6 18S ribosomal RNA gene, partial sequence blastn 23865 435 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
19578196 19578196 PRJNA492406_P_NODE_17016_length_303_cov_1.695652_g16717_i0 PRJNA492406 17016 303 1.695652 5.13782556 uncultured Trebouxia photobiont 285713 Plants Plants 87.9 7.74e-13   NTclustered gi|356700925|gb|JN847668.1| 285713 g16717 i0 87.342 21.5544554455446 79 6 25 4 1 77 246 170 Uncultured Trebouxia photobiont clone 530R.K5-1-2 16S ribosomal RNA gene, partial sequence; mitochondrial blastn 6531 87.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
19578406 19578406 PRJNA492406_P_NODE_26096_length_253_cov_1.311111_g25797_i0 PRJNA492406 26096 253 1.311111 3.31711083 Prototheca ciferrii 1973153 Plants Plants 148 2.8499999999999995e-31   NTclustered gi|1381389463|ref|NC_037449.1| 1973153 g25797 i0 88.525 38.695652173913 122 14 48 0 63 184 25221 25342 Prototheca zopfii strain SAG 2063 mitochondrion, complete genome blastn 9790 148 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca ciferrii
21501230 21501230 PRJNA492406_P_NODE_9377_length_400_cov_10.143731_g9078_i0 PRJNA492406 9377 400 10.143731 40.574924 Eukaryota 2759 Plants Plants 706 0   NTclustered gi|1201359271|gb|MF040793.1| 3078 g9078 i0 98.5 98.98 400 6 100 0 1 400 578 977 Auxenochlorella pyrenoidosa isolate HITH6 18S ribosomal RNA gene, partial sequence blastn 39592 712 0.991573033707865 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
23404946 23404946 PRJNA492406_P_NODE_31079_length_243_cov_0.905882_g30780_i0 PRJNA492406 31079 243 0.905882 2.20129326 Monoraphidium neglectum 145388 Plants Plants 193 1.24e-44   NTclustered gi|926795717|ref|XM_014050538.1| 145388 g30780 i0 83.178 25.6543209876543 214 32 87 3 24 235 70 281 Monoraphidium neglectum 40S ribosomal protein S20-1 mRNA blastn 6234 193 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;