RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA492406" and tax_clade = "Metamonada"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA492406 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2374785 2374785 PRJNA492406_P_NODE_26242_length_252_cov_1.508380_g25943_i0 PRJNA492406 26242 252 1.50838 3.8011176 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 117 7.99e-22   NTclustered gi|74039647|gb|DQ118092.1| 342808 g25943 i0 86.667 6.96825396825397 105 14 42 0 3 107 513 409 Trimastix pyriformis ribosomal protein L7A mRNA, complete cds blastn 1756 117 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis
5555772 5555772 PRJNA492406_P_NODE_10085_length_387_cov_573.713376_g9786_i0 PRJNA492406 10085 387 573.713376 2220.27076512 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 65.8 4.75e-6   NTclustered gi|2319615616|ref|XR_007835995.1| 412133 g9786 i0 90.385 0.602067183462532 52 2 13 3 120 170 2561 2610 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034210), rRNA blastn 233 65.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
20854333 20854333 PRJNA492406_P_NODE_32197_length_241_cov_0.916667_g31898_i0 PRJNA492406 32197 241 0.916667 2.20916747 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 54.7 0.006   NTclustered gi|2319621478|ref|XM_001316247.2| 412133 g31898 i0 100 0.352697095435685 29 0 12 0 2 30 295 267 Trichomonas vaginalis G3 uncharacterized protein (TVAGG3_0108900), partial mRNA blastn 85 54.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;