RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA492363" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA492363 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25567341 25567341 PRJNA492363_S_NODE_97017_length_203_cov_0.901408_g96196_i0 PRJNA492363 97017 203 0.901408 1.82985824 Anaeromyxobacter sp. Fw1 1872521 Bacteria Bacteria 52.8 0.018   NTclustered gi|152026452|gb|CP000769.1| 404589 g96196 i0 100 0.137931034482759 28 0 14 0 115 142 4005725 4005698 Anaeromyxobacter sp. Fw109-5, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp. Fw109-5
25974160 25974160 PRJNA492363_S_NODE_118716_length_182_cov_4.206612_g117895_i0 PRJNA492363 118716 182 4.206612 7.65603384 Pendulispora albinea 2741071 Bacteria Bacteria 56.5 0.001   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g117895 i0 100 0.164835164835165 30 0 16 0 3 32 6904058 6904087 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 30 56.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
26382542 26382542 PRJNA492363_S_NODE_22263_length_246_cov_0.897297_g21442_i0 PRJNA492363 22263 246 0.897297 2.20735062 Archangium violaceum 83451 Bacteria Bacteria 239 1.59e-58   NTclustered gi|2619762464|gb|CP137851.1| 83451 g21442 i0 88.442 61.8170731707317 199 21 80 2 1 197 2939685 2939883 Archangium violaceum strain KYC5002 chromosome, complete genome blastn 15207 239 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
26383908 26383908 PRJNA492363_S_NODE_98983_length_202_cov_0.907801_g98162_i0 PRJNA492363 98983 202 0.907801 1.83375802 Sandaracinus amylolyticus 927083 Bacteria Bacteria 69.4 1.75e-7   NTclustered gi|816953346|gb|CP011125.1| 927083 g98162 i0 93.478 1.18316831683168 46 3 23 0 38 83 240106 240061 Sandaracinus amylolyticus strain DSM 53668, complete genome blastn 239 69.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;