RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA492363" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA492363 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25975648 25975648 PRJNA492363_S_NODE_91372_length_206_cov_1.324138_g90551_i0 PRJNA492363 91372 206 1.324138 2.72772428 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 52.8 0.018   NTclustered gi|2874253709|emb|OY969474.1| 171953 g90551 i0 100 0.135922330097087 28 0 14 0 114 141 688502 688529 MAG: uncultured Acidobacteriota bacterium isolate MFD05747.bin.1.131 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
26111633 26111633 PRJNA492363_S_NODE_89805_length_207_cov_0.876712_g88984_i0 PRJNA492363 89805 207 0.876712 1.81479384 Holophagales bacterium 2478486 Bacteria Bacteria 176 1.03e-39   NTclustered gi|1958024485|gb|CP064972.1| 2478486 g88984 i0 82.587 45.7004830917874 201 33 97 2 4 203 1577558 1577359 Holophagales bacterium isolate EsbW_18-Q3-R4-48_BAT3C.4_cln chromosome, complete genome blastn 9460 176 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales     Holophagales bacterium
26382557 26382557 PRJNA492363_S_NODE_23479_length_245_cov_2.179348_g22658_i0 PRJNA492363 23479 245 2.179348 5.3394026 Terriglobia bacterium 2081523 Bacteria Bacteria 185 2.09e-42   NTclustered gi|2518552083|emb|OX638355.1| 2081523 g22658 i0 82.192 69.0897959183673 219 36 89 1 3 221 5076892 5076677 MAG: Terriglobia bacterium isolate 290eebee-5386-4bec-b87c-7b5c19ab3581 genome assembly, chromosome: 1 blastn 16927 185 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;