RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA492280" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA492280 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8105067 8105067 PRJNA492280_P_NODE_20787_length_164_cov_3.204724_g20680_i0 PRJNA492280 20787 164 3.204724 5.25574736 Potexvirus pepini 3433856 Viruses Viruses 233 4.56e-57   NTclustered gi|2675378618|gb|PP116314.1| 112229 g20680 i0 89.697 61.1524390243902 165 14 99 1 3 164 1163 1327 MAG: Pepino mosaic virus isolate 7452_PepMV, complete genome blastn 10029 233 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
8751773 8751773 PRJNA492280_P_NODE_14787_length_164_cov_4.669291_g14680_i0 PRJNA492280 14787 164 4.669291 7.65763724 Potexvirus 12176 Viruses Viruses 224 2.74e-54   NTclustered gi|1830461434|gb|MT018444.1| 112229 g14680 i0 89.157 56.2012195121951 166 12 98 2 2 161 3317 3152 Pepino mosaic virus isolate Ah, complete genome blastn 9217 224 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
13205799 13205799 PRJNA492280_P_NODE_31851_length_151_cov_2.684211_g31744_i0 PRJNA492280 31851 151 2.684211 4.05315861 Potexvirus pepini 3433856 Viruses Viruses 272 8.689999999999998e-69   NTclustered gi|429474440|gb|JX866668.1| 112229 g31744 i0 100 85.8609271523179 147 0 97 0 2 148 3036 2890 Pepino mosaic virus isolate VFTX12-16, complete genome blastn 12965 272 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
24051009 24051009 PRJNA492280_P_NODE_8179_length_185_cov_3.317568_g8072_i0 PRJNA492280 8179 185 3.317568 6.1375008 Potexvirus 12176 Viruses Viruses 174 3.23e-39   NTclustered gi|1421680767|gb|MH550257.1| 112229 g8072 i0 98.969 82.0324324324324 97 1 92 0 1 97 1410 1314 Pepino mosaic virus isolate GR17-8b TGBp1, TGBp2, TGBp3, and CP genes, complete cds blastn 15176 174 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;