RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA492280" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA492280 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4279064 4279064 PRJNA492280_P_NODE_27604_length_161_cov_3.798387_g27497_i0 PRJNA492280 27604 161 3.798387 6.11540307 Asterionellopsis glacialis 33640 SAR_Eukaryotes SAR_Eukaryotes 220 3.46e-53   NTclustered gi|2202538972|gb|OM891878.1| 33640 g27497 i0 91.772 95.5031055900621 158 13 98 0 4 161 4221 4378 Asterionellopsis glacialis small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15376 220 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Asterionellopsis Asterionellopsis glacialis
13205665 13205665 PRJNA492280_P_NODE_19271_length_164_cov_3.456693_g19164_i0 PRJNA492280 19271 164 3.456693 5.66897652 Asterionella formosa 210441 SAR_Eukaryotes SAR_Eukaryotes 135 1.32e-27   NTclustered gi|1111668563|ref|NC_032029.1| 210441 g19164 i0 100 36.2865853658537 73 0 90 0 4 76 27770 27698 Asterionella formosa strain BGM1 mitochondrion, complete genome blastn 5951 135 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Asterionella Asterionella formosa
24678113 24678113 PRJNA492280_P_NODE_320_length_724_cov_7.682678_g255_i0 PRJNA492280 320 724 7.682678 55.62258872 Stephanopyxis turris 515487 SAR_Eukaryotes SAR_Eukaryotes 128 1.17e-24   NTclustered gi|2074156161|gb|MW413903.1| 515487 g255 i0 82.051 32.475138121547 156 22 21 6 482 634 16991 16839 Stephanopyxis turris mitochondrion, complete genome blastn 23512 128 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Melosirales Stephanopyxidaceae Stephanopyxis Stephanopyxis turris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;