RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA489308" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA489308 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11928777 11928777 PRJNA489308_P_NODE_19730_length_288_cov_1.683721_g19654_i0 PRJNA489308 19730 288 1.683721 4.84911648 Saccharolobus islandicus 43080 Archaea Archaea 54.7 0.007   NTclustered gi|228018622|gb|CP001401.1| 427318 g19654 i0 100 0.100694444444444 29 0 10 0 230 258 1032325 1032297 Sulfolobus islandicus M.16.27, complete genome blastn 29 54.7 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus islandicus
17027510 17027510 PRJNA489308_P_NODE_30894_length_251_cov_0.865169_g30818_i0 PRJNA489308 30894 251 0.865169 2.17157419 Methanosarcina barkeri 2208 Archaea Archaea 52.8 0.023   NTclustered gi|805384997|gb|CP009517.1| 1434107 g30818 i0 94.118 0.270916334661355 34 2 14 0 31 64 2503792 2503759 Methanosarcina barkeri 3, complete genome blastn 68 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;