RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA489308" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA489308 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4277281 4277281 PRJNA489308_P_NODE_33324_length_248_cov_0.880000_g33248_i0 PRJNA489308 33324 248 0.88 2.1824 Polychytrium aggregatum 110093 Fungi Fungi 54.7 0.006   NTclustered gi|2432144566|ref|XM_053115345.1| 110093 g33248 i0 100 0.116935483870968 29 0 12 0 20 48 553 581 Polychytrium aggregatum ran-specific GTPase-activating protein (BJ171DRAFT_616054), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
10653969 10653969 PRJNA489308_P_NODE_4029_length_509_cov_7.580275_g3953_i0 PRJNA489308 4029 509 7.580275 38.58359975 Polychytrium aggregatum 110093 Fungi Fungi 180 2.1899999999999998e-40   NTclustered gi|2432162630|ref|XM_053112000.1| 110093 g3953 i0 78.472 27.1257367387033 288 52 56 6 13 298 244 523 Polychytrium aggregatum ribosomal protein L22/L17 (BJ171DRAFT_515986), mRNA blastn 13807 180 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
13204038 13204038 PRJNA489308_P_NODE_8391_length_379_cov_8.421569_g8315_i0 PRJNA489308 8391 379 8.421569 31.91774651 Polychytrium aggregatum 110093 Fungi Fungi 121 9.76e-23   NTclustered gi|2432138713|ref|XM_053107478.1| 110093 g8315 i0 84.252 5.66490765171504 127 16 33 3 242 366 148 24 Polychytrium aggregatum large subunit ribosomal protein 29 (BJ171DRAFT_421272), partial mRNA blastn 2147 121 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
15752937 15752937 PRJNA489308_P_NODE_40473_length_229_cov_2.679487_g40397_i0 PRJNA489308 40473 229 2.679487 6.13602523 Synchytrium microbalum 1806994 Fungi Fungi 239 1.46e-58   NTclustered gi|1759145969|ref|XM_031167831.1| 1806994 g40397 i0 86.854 68.5196506550218 213 28 93 0 15 227 2116 2328 Synchytrium microbalum uncharacterized protein (SmJEL517_g01903), partial mRNA blastn 15691 239 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
18301980 18301980 PRJNA489308_P_NODE_9355_length_365_cov_1.054795_g9279_i0 PRJNA489308 9355 365 1.054795 3.85000175 Polychytrium aggregatum 110093 Fungi Fungi 156 2.57e-33   NTclustered gi|2432131435|ref|XM_053109312.1| 110093 g9279 i0 91.228 38.041095890411 114 10 31 0 1 114 1366 1479 Polychytrium aggregatum beta-tubulin (BJ171DRAFT_487560), mRNA blastn 13885 156 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;